GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
ARATH:SCL23
Contents
| Species (Taxon ID) | Arabidopsis thaliana (Mouse-ear cress). (3702) | |
| Gene Name(s) | SCL23 | |
| Protein Name(s) | Scarecrow-like protein 23
AtSCL23 GRAS family protein 28 AtGRAS-28 | |
| External Links | ||
| UniProt | Q9FHZ1 | |
| EMBL | AB017067 CP002688 BT029760 | |
| RefSeq | NP_199007.1 | |
| UniGene | At.67848 At.72727 | |
| ProteinModelPortal | Q9FHZ1 | |
| IntAct | Q9FHZ1 | |
| STRING | 3702.AT5G41920.1 | |
| DNASU | 834197 | |
| EnsemblPlants | AT5G41920.1 | |
| GeneID | 834197 | |
| KEGG | ath:AT5G41920 | |
| GeneFarm | 4246 | |
| TAIR | AT5G41920 | |
| eggNOG | NOG72098 | |
| HOGENOM | HOG000238577 | |
| InParanoid | Q9FHZ1 | |
| OMA | DEATVVH | |
| PhylomeDB | Q9FHZ1 | |
| PRO | PR:Q9FHZ1 | |
| Proteomes | UP000006548 | |
| GO | GO:0005634 GO:0003700 GO:0090610 GO:0048366 GO:0006355 GO:0006351 | |
| InterPro | IPR005202 | |
| Pfam | PF03514 | |
| PROSITE | PS50985 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0001714 |
endodermal cell fate specification |
ECO:0000316 |
|
P |
SCL23 works with SCR to regulate endodermal cell fate. This is shown in Figure 2 where the mutant lacking SCL23 can differentiate cells to a certain extent. |
complete | ||||
|
involved_in |
GO:0090610 |
bundle sheath cell fate specification |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0048366 |
leaf development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
F |
Seeded From UniProt |
Missing: with/from | |||
|
involved_in |
GO:0090610 |
bundle sheath cell fate specification |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN002057407 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0048366 |
leaf development |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN002057407 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0043565 |
sequence-specific DNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000780710 |
F |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000780710 |
C |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000780710 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Long, Y et al. (2015) SCARECROW-LIKE23 and SCARECROW jointly specify endodermal cell fate but distinctly control SHORT-ROOT movement. Plant J. PubMed GONUTS page
- ↑ 2.0 2.1 2.2 Cui, H et al. (2014) SCARECROW, SCR-LIKE 23 and SHORT-ROOT control bundle sheath cell fate and function in Arabidopsis thaliana. Plant J. 78 319-27 PubMed GONUTS page
- ↑ 3.0 3.1 Riechmann, JL et al. (2000) Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 290 2105-10 PubMed GONUTS page
- ↑ 4.0 4.1 4.2 4.3 4.4 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
