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ARATH:Q9LPZ4
Contents
| Species (Taxon ID) | Arabidopsis thaliana (Mouse-ear cress). (3702) | |
| Gene Name(s) | PYM (ECO:0000313 with EMBL:AEE28730.1) | |
| Protein Name(s) | Partner of Y14-mago (ECO:0000313 with EMBL:AEE28730.1)
Putative uncharacterized protein At1g11400 (ECO:0000313 with EMBL:AAO42233.1) T23J18.7 (ECO:0000313 with EMBL:AAF16626.1) | |
| External Links | ||
| UniProt | Q9LPZ4 | |
| EMBL | AC011661 BT004216 BT005041 CP002684 CP002684 CP002684 | |
| PIR | H86247 | |
| RefSeq | NP_001031023.1 NP_563890.1 NP_849639.1 | |
| UniGene | At.42135 | |
| SMR | Q9LPZ4 | |
| EnsemblPlants | AT1G11400.1 AT1G11400.2 AT1G11400.3 | |
| GeneID | 837682 | |
| KEGG | ath:AT1G11400 | |
| TAIR | AT1G11400 | |
| HOGENOM | HOG000215176 | |
| KO | K14294 | |
| OMA | CASESFE | |
| PhylomeDB | Q9LPZ4 | |
| PRO | PR:Q9LPZ4 | |
| Proteomes | UP000006548 | |
| Genevestigator | Q9LPZ4 | |
| GO | GO:0005737 GO:0005730 GO:0005654 GO:0010628 | |
| InterPro | IPR015362 | |
| Pfam | PF09282 | |
| SUPFAM | SSF101931 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
involved_in |
GO:0010628 |
positive regulation of gene expression |
ECO:0000270 |
expression pattern evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005730 |
nucleolus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005654 |
nucleoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:1903259 |
exon-exon junction complex disassembly |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0034918 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0035145 |
exon-exon junction complex |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0034918 |
C |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0034918 |
C |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003723 |
RNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0034918 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:1903259 |
exon-exon junction complex disassembly |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006417 |
regulation of translation |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0000184 |
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0051028 |
mRNA transport |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003723 |
RNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005654 |
nucleoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005730 |
nucleolus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Mufarrege, EF et al. (2011) Functional interconnections of Arabidopsis exon junction complex proteins and genes at multiple steps of gene expression. J. Exp. Bot. 62 5025-36 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 Park, NI & Muench, DG (2007) Biochemical and cellular characterization of the plant ortholog of PYM, a protein that interacts with the exon junction complex core proteins Mago and Y14. Planta 225 625-39 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 3.3 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
