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9CAUD:U5PXE3
Contents
| Species (Taxon ID) | Bacillus phage Spock. (1406791) | |
| Gene Name(s) | No Information Provided. | |
| Protein Name(s) | RNA polymerase sigma factor (ECO:0000313 with EMBL:AGY48564.1) | |
| External Links | ||
| UniProt | U5PXE3 | |
| EMBL | KF669662 | |
| RefSeq | YP_008770388.1 | |
| GeneID | 17959190 | |
| KEGG | vg:17959190 | |
| Proteomes | UP000017657 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0006352 |
DNA-templated transcription, initiation |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
|
P |
HHpred top two matches as: RNA polymerase sigma factor CnrH (P37978) from Cupriavidus metallidurans - probability: 99.77 e-value: 1.1E-20 score: 139.19 Query coverage: 27-211 (out of 1-211). This protein has a previous annotation for DNA template transcription initiation shown through IDA. There were many Blastp matches with 100% or near 100% query coverage and low e-values to purported putative sigma factors on recently annotated phages. PMID:16158236[1] - showing function for CnrH from Cupriavidus metallidurans A sigma factor's likely role in a phage is to modulate gene expression to its own promoters, while downregulating transcription of host genes. |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Grass, G et al. (2005) Control of expression of a periplasmic nickel efflux pump by periplasmic nickel concentrations. Biometals 18 437-48 PubMed GONUTS page
