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YEAST:SET3
Contents
| Species (Taxon ID) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast). (559292) | |
| Gene Name(s) | SET3 | |
| Protein Name(s) | SET domain-containing protein 3 | |
| External Links | ||
| UniProt | P36124 | |
| EMBL | Z28254 BK006944 | |
| PIR | S38101 | |
| RefSeq | NP_012954.3 | |
| ProteinModelPortal | P36124 | |
| SMR | P36124 | |
| BioGrid | 34162 | |
| DIP | DIP-5632N | |
| IntAct | P36124 | |
| MINT | MINT-548373 | |
| MaxQB | P36124 | |
| PaxDb | P36124 | |
| EnsemblFungi | [example_ID YKR029C] | |
| GeneID | 853900 | |
| KEGG | sce:YKR029C | |
| CYGD | YKR029c | |
| EuPathDB | FungiDB:YKR029C | |
| SGD | S000001737 | |
| eggNOG | COG2940 | |
| GeneTree | ENSGT00700000105281 | |
| HOGENOM | HOG000141785 | |
| InParanoid | P36124 | |
| KO | K07117 | |
| OMA | FTIQCDH | |
| OrthoDB | EOG793BH2 | |
| BioCyc | YEAST:G3O-32005-MONOMER | |
| NextBio | 975224 | |
| PRO | PR:P36124 | |
| Proteomes | UP000002311 | |
| GO | GO:0034967 GO:0035064 GO:0008270 GO:0016575 GO:0051321 GO:0045835 GO:0006355 GO:0006351 | |
| Gene3D | 3.30.40.10 | |
| InterPro | IPR001214 IPR019786 IPR011011 IPR001965 IPR019787 IPR013083 | |
| Pfam | PF00628 | |
| SMART | SM00249 SM00317 | |
| SUPFAM | SSF57903 | |
| PROSITE | PS50280 PS01359 PS50016 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0035961 |
positive regulation of ergosterol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter |
ECO:0000315 |
P |
Figure 6 |
complete | |||||
| GO:0070452 |
positive regulation of ergosterol biosynthetic process |
ECO:0000315 |
P |
Figure 6 |
complete | |||||
|
enables |
GO:0035064 |
methylated histone binding |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0070210 |
Rpd3L-Expanded complex |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0045835 |
negative regulation of meiotic nuclear division |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0035064 |
methylated histone binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0034967 |
Set3 complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0016575 |
histone deacetylation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0046872 |
metal ion binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006325 |
chromatin organization |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0051321 |
meiotic cell cycle |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 South, PF et al. (2013) H3K4 methyltransferase Set1 is involved in maintenance of ergosterol homeostasis and resistance to Brefeldin A. Proc. Natl. Acad. Sci. U.S.A. 110 E1016-25 PubMed GONUTS page
- ↑ Ali, M et al. (2013) Molecular basis for chromatin binding and regulation of MLL5. Proc. Natl. Acad. Sci. U.S.A. 110 11296-301 PubMed GONUTS page
- ↑ Shevchenko, A et al. (2008) Chromatin Central: towards the comparative proteome by accurate mapping of the yeast proteomic environment. Genome Biol. 9 R167 PubMed GONUTS page
- ↑ 4.0 4.1 4.2 Pijnappel, WW et al. (2001) The S. cerevisiae SET3 complex includes two histone deacetylases, Hos2 and Hst1, and is a meiotic-specific repressor of the sporulation gene program. Genes Dev. 15 2991-3004 PubMed GONUTS page
- ↑ Shi, X et al. (2007) Proteome-wide analysis in Saccharomyces cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36. J. Biol. Chem. 282 2450-5 PubMed GONUTS page
- ↑ Kim, T & Buratowski, S (2009) Dimethylation of H3K4 by Set1 recruits the Set3 histone deacetylase complex to 5' transcribed regions. Cell 137 259-72 PubMed GONUTS page
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