VIBF1:Q5DYR1

Species (Taxon ID)	Vibrio fischeri (strain ATCC 700601 / ES114). (312309)
Gene Name(s)	rpoQ (ECO:0000313 with EMBL:AAW88085.1)
Protein Name(s)	RNA polymerase sigma factor (ECO:0000256 with RuleBase:RU000715)
External Links
UniProt	Q5DYR1
EMBL	CP000021
RefSeq	WP_011263824.1 YP_206973.1
ProteinModelPortal	Q5DYR1
STRING	312309.VF_A1015
EnsemblBacteria	AAW88085
GeneID	3280514
KEGG	vfi:VF_A1015
PATRIC	20118027
eggNOG	COG0568
HOGENOM	HOG000270273
KO	K03087
OMA	FENTGEE
OrthoDB	EOG6XHC70
BioCyc	AFIS312309:GIWP-3775-MONOMER
Proteomes	UP000000537
GO	GO:0003677 GO:0003700 GO:0016987 GO:0006352 GO:0045892
Gene3D	1.10.10.10
InterPro	IPR014284 IPR000943 IPR009042 IPR007627 IPR007630 IPR013325 IPR013324 IPR011991
Pfam	PF00140 PF04542 PF04545
PRINTS	PR00046
SUPFAM	SSF88659 SSF88946
TIGRFAMs	TIGR02937
PROSITE	PS00715 PS00716

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Extension	Notes	Status
	GO:2000146	negative regulation of cell motility	PMID:22233679	ECO:0000315			P		Figure 7 shows that strains of V. fischeri that overexpress RpoQ have reduced motility	complete CACAO 5292
	GO:0045892	negative regulation of transcription, DNA-dependent	PMID:22233679	ECO:0000315			P		Figure 6 shows that V. fischeri that overexpress RpoQ have lowered expression levels of luxICDABEG	complete CACAO 5293
	GO:0035885	exochitinase activity	PMID:22233679	ECO:0000315			F		Figure 8A. The ΔrpoQ mutant showed chitinase activity that was significantly lower than the wild type. Both the wild type and the ΔrpoQ mutant overexpressing RpoQ showed chitinase activity that was 2.3- to 2.8-fold-higher.	complete CACAO 8658
enables	GO:0035885	exochitinase activity	PMID:22233679	ECO:0000315	mutant phenotype evidence used in manual assertion		F		Seeded From UniProt	complete
involved_in	GO:0045892	negative regulation of transcription, DNA-templated	PMID:22233679	ECO:0000315	mutant phenotype evidence used in manual assertion		P		Seeded From UniProt	complete
involved_in	GO:2000142	regulation of DNA-templated transcription, initiation	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0016987	P		Seeded From UniProt	complete
involved_in	GO:2000142	regulation of DNA-templated transcription, initiation	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0016987	P		Seeded From UniProt	complete
enables	GO:0003677	DNA binding	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR009042	F		Seeded From UniProt	complete
enables	GO:0003700	DNA-binding transcription factor activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR000943 InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013325 InterPro:IPR014284	F		Seeded From UniProt	complete
involved_in	GO:0006352	DNA-templated transcription, initiation	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR000943 InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013325 InterPro:IPR014284	P		Seeded From UniProt	complete
involved_in	GO:0006355	regulation of transcription, DNA-templated	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR000943 InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013325 InterPro:IPR014284	P		Seeded From UniProt	complete
enables	GO:0016987	sigma factor activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR009042	F		Seeded From UniProt	complete
enables	GO:0016987	sigma factor activity	GO_REF:0000038	ECO:0000323	imported automatically asserted information used in automatic assertion	UniProtKB-KW:KW-0731	F		Seeded From UniProt	complete
involved_in	GO:0006355	regulation of transcription, DNA-templated	GO_REF:0000038	ECO:0000323	imported automatically asserted information used in automatic assertion	UniProtKB-KW:KW-0731	P		Seeded From UniProt	complete
enables	GO:0003677	DNA binding	GO_REF:0000038	ECO:0000323	imported automatically asserted information used in automatic assertion	UniProtKB-KW:KW-0238	F		Seeded From UniProt	complete
enables	GO:0003700	DNA-binding transcription factor activity	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000173759	F		Seeded From UniProt	complete
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References

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