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VIBC3:TCPN
Contents
Species (Taxon ID) | Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 /O395). (345073) | |
Gene Name(s) | tcpN (synonyms: toxT) | |
Protein Name(s) | TCP pilus virulence regulatory protein | |
External Links | ||
UniProt | A5F384 | |
EMBL | AF325733 CP000627 CP001235 | |
RefSeq | YP_001216319.1 YP_002819105.1 | |
PDB | 3GBG | |
PDBsum | 3GBG | |
ProteinModelPortal | A5F384 | |
STRING | 345073.VC0395_A0363 | |
EnsemblBacteria | ABQ20018 ACP08869 | |
GeneID | 5136424 7774854 | |
KEGG | vco:VC0395_A0363 vcr:VC395_0854 | |
eggNOG | COG2207 | |
KO | K10923 | |
OMA | INQLPPM | |
EvolutionaryTrace | A5F384 | |
Proteomes | UP000000249 UP000001630 | |
GO | GO:0005737 GO:0043565 GO:0003700 GO:0009405 GO:0006351 | |
Gene3D | 1.10.10.60 | |
InterPro | IPR009057 IPR018060 IPR018062 IPR020449 | |
Pfam | PF00165 | |
PRINTS | PR00032 | |
SMART | SM00342 | |
SUPFAM | SSF46689 | |
PROSITE | PS00041 PS01124 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
involved_in |
GO:0045893 |
positive regulation of transcription, DNA-templated |
ECO:0001204 |
in vitro transcription assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0032993 |
protein-DNA complex |
ECO:0005667 |
site-directed mutagenesis phenotypic evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0032993 |
protein-DNA complex |
ECO:0005667 |
site-directed mutagenesis phenotypic evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0032993 |
protein-DNA complex |
ECO:0005667 |
site-directed mutagenesis phenotypic evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0032993 |
protein-DNA complex |
ECO:0005667 |
site-directed mutagenesis phenotypic evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0032993 |
protein-DNA complex |
ECO:0005631 |
DNAse footprinting evidence used in manual assertion |
RefSeq:NC_009456.1 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0032993 |
protein-DNA complex |
ECO:0005626 |
copper-phenanthroline footprinting evidence used in manual assertion |
RefSeq:NC_009456.1 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0032993 |
protein-DNA complex |
ECO:0005626 |
copper-phenanthroline footprinting evidence used in manual assertion |
RefSeq:NC_009457.1 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0032993 |
protein-DNA complex |
ECO:0005626 |
copper-phenanthroline footprinting evidence used in manual assertion |
RefSeq:NC_009457.1 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0032993 |
protein-DNA complex |
ECO:0001807 |
electrophoretic mobility shift assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0032993 |
protein-DNA complex |
ECO:0001807 |
electrophoretic mobility shift assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0001217 |
DNA-binding transcription repressor activity |
ECO:0005667 |
site-directed mutagenesis phenotypic evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0001217 |
DNA-binding transcription repressor activity |
ECO:0005626 |
copper-phenanthroline footprinting evidence used in manual assertion |
RefSeq:NC_009456.1 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0001217 |
DNA-binding transcription repressor activity |
ECO:0001807 |
electrophoretic mobility shift assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0001216 |
DNA-binding transcription activator activity |
ECO:0005667 |
site-directed mutagenesis phenotypic evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0001216 |
DNA-binding transcription activator activity |
ECO:0005667 |
site-directed mutagenesis phenotypic evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0001216 |
DNA-binding transcription activator activity |
ECO:0005667 |
site-directed mutagenesis phenotypic evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0001216 |
DNA-binding transcription activator activity |
ECO:0005631 |
DNAse footprinting evidence used in manual assertion |
RefSeq:NC_009456.1 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0001216 |
DNA-binding transcription activator activity |
ECO:0005626 |
copper-phenanthroline footprinting evidence used in manual assertion |
RefSeq:NC_009457.1 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0001216 |
DNA-binding transcription activator activity |
ECO:0005626 |
copper-phenanthroline footprinting evidence used in manual assertion |
RefSeq:NC_009457.1 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0001216 |
DNA-binding transcription activator activity |
ECO:0001807 |
electrophoretic mobility shift assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0000976 |
transcription regulatory region sequence-specific DNA binding |
ECO:0005667 |
site-directed mutagenesis phenotypic evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0000976 |
transcription regulatory region sequence-specific DNA binding |
ECO:0005667 |
site-directed mutagenesis phenotypic evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0000976 |
transcription regulatory region sequence-specific DNA binding |
ECO:0005667 |
site-directed mutagenesis phenotypic evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0000976 |
transcription regulatory region sequence-specific DNA binding |
ECO:0005667 |
site-directed mutagenesis phenotypic evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0000976 |
transcription regulatory region sequence-specific DNA binding |
ECO:0005631 |
DNAse footprinting evidence used in manual assertion |
RefSeq:NC_009456.1 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0000976 |
transcription regulatory region sequence-specific DNA binding |
ECO:0005626 |
copper-phenanthroline footprinting evidence used in manual assertion |
RefSeq:NC_009456.1 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0000976 |
transcription regulatory region sequence-specific DNA binding |
ECO:0005626 |
copper-phenanthroline footprinting evidence used in manual assertion |
RefSeq:NC_009457.1 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0000976 |
transcription regulatory region sequence-specific DNA binding |
ECO:0005626 |
copper-phenanthroline footprinting evidence used in manual assertion |
RefSeq:NC_009457.1 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0000976 |
transcription regulatory region sequence-specific DNA binding |
ECO:0001807 |
electrophoretic mobility shift assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0000976 |
transcription regulatory region sequence-specific DNA binding |
ECO:0001807 |
electrophoretic mobility shift assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045892 |
negative regulation of transcription, DNA-templated |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0001217 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0045892 |
negative regulation of transcription, DNA-templated |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0001217 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0045892 |
negative regulation of transcription, DNA-templated |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0001217 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0043565 |
sequence-specific DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0009405 |
pathogenesis |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Yu, RR & DiRita, VJ (2002) Regulation of gene expression in Vibrio cholerae by ToxT involves both antirepression and RNA polymerase stimulation. Mol. Microbiol. 43 119-34 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 Dittmer, JB & Withey, JH (2012) Identification and characterization of the functional toxboxes in the Vibrio cholerae cholera toxin promoter. J. Bacteriol. 194 5255-63 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 3.3 3.4 3.5 Withey, JH & DiRita, VJ (2006) The toxbox: specific DNA sequence requirements for activation of Vibrio cholerae virulence genes by ToxT. Mol. Microbiol. 59 1779-89 PubMed GONUTS page
- ↑ 4.0 4.1 4.2 Withey, JH & Dirita, VJ (2005) Vibrio cholerae ToxT independently activates the divergently transcribed aldA and tagA genes. J. Bacteriol. 187 7890-900 PubMed GONUTS page
- ↑ 5.0 5.1 5.2 5.3 5.4 5.5 Withey, JH & DiRita, VJ (2005) Activation of both acfA and acfD transcription by Vibrio cholerae ToxT requires binding to two centrally located DNA sites in an inverted repeat conformation. Mol. Microbiol. 56 1062-77 PubMed GONUTS page
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