User:Waldhorn

My Annotations

Status	Page	Date/Time	GO Term (Aspect)	Reference	Evidence	Notes	Links
acceptable	RHOJR:Q932V1	2012-04-10 11:31:33 CDT	GO:0043639 benzoate catabolic process (P)	PMID:11673430	ECO:0000315 mutant phenotype evidence used in manual assertion	Fig. 6 indicates that the wildtype RHA1 is able to degrade benzoate, a product of biphenyl metabolism, as indicated by a final concentration of 0mM benzoate in the medium. The mutant, RDB169 (benA deleted), is unable to degrade the benzoate as effectively as shown by final benzoate concentrations between 3.3 and 6.8mM in the medium.	challenge
requireschanges	FLAJ1:A5FIT1	2012-04-15 12:02:19 CDT	GO:0071976 cell gliding (P)	PMID:20038590	ECO:0000315 mutant phenotype evidence used in manual assertion	Fig. 2A and 2E shows that wildtype cells form spreading colonies whereas cells of the gldN mutant formed nonspreading colonies.	challenge
requireschanges	FLAJ1:A5FIT2	2012-04-15 12:06:35 CDT	GO:0071976 cell gliding (P)	PMID:20038590	ECO:0000315 mutant phenotype evidence used in manual assertion	Fig. 2A and 2I show that wildtype cells form spreading colonies whereas cells of the glnO mutant formed nonspreading colonies	challenge
acceptable	FLAJ1:A1E5U5	2012-04-15 12:37:16 CDT	GO:0071976 cell gliding (P)	PMID:21421754	ECO:0000315 mutant phenotype evidence used in manual assertion	Fig. 9A and B shows that the wildtype cells glide successfully whereas the sprB deletion mutant glides hardly at all.	challenge
requireschanges	FLAJ1:A1E5T9	2012-04-15 12:52:11 CDT	GO:0071976 cell gliding (P)	PMID:21784937	ECO:0000315 mutant phenotype evidence used in manual assertion	Table 1 shows that the average number of cells attached to 0.03mm^2 region of glass coverslip was 52.9 whereas the sprE deficient mutant only had 2 cells attached for the same area. This is reiterated in Fig. 2 where the wildtype has spreading colonies and the sprE mutant does not produce spreading colonies.	challenge
unacceptable	ASPFM:Q6S9W4	2012-04-15 13:17:24 CDT	GO:0030010 establishment of cell polarity (P)	PMID:19389762	ECO:0000315 mutant phenotype evidence used in manual assertion	Fig. 4 shows that the wildtype has an accumulation of actin patches at the poles whereas the mutant has actin patches evenly distributed throughout.	challenge

acceptable:2
unacceptable:1
requires_changes:3
flagged:0

Annotations challenged by Waldhorn

Status	Author,Group	Page	GO Term (Aspect)	Reference	Evidence	Links	Page history

0 annotations fixed by Waldhorn

My Annotations

Status	Page	Date/Time	GO Term (Aspect)	Reference	Evidence	Notes	Links
requireschanges	9GAMM:A5H9N6	2012-03-31 22:29:46 CDT	GO:0043448 alkane catabolic process (P)	PMID:17400787	ECO:0000315 mutant phenotype evidence used in manual assertion	Figure 2 indicates that almA deficient mutants produce little to no protein when grown in medium containing alkanes with chain length greater than 32 whereas the wildtype is able to successfully produce protein when grown on medium containing these long chain alkanes. almA encodes AlmA, a putative flavin-binding monooxygenase, which is involved in metabolism of long chain alkanes.	challenge

acceptable:0
unacceptable:0
requires_changes:1
flagged:0

Annotations challenged by Waldhorn

Status	Author,Group	Page	GO Term (Aspect)	Reference	Evidence	Links	Page history

0 annotations fixed by Waldhorn