GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

User:Ryancallahan

From GONUTS
Jump to: navigation, search

CACAO Spring 2017

My Annotations

StatusPageDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
unacceptableSALTY:Q8ZQ032017-03-12 18:47:47 CDTGO:0043709 cell adhesion involved in single-species biofilm formation (P)PMID:23451197ECO:0000315 mutant phenotype evidence used in manual assertion

Protein: ycfR

Organism: Salmonella typhimurium strain LT2 A significant decrease in attachment to glass and polystyrene was observed in Salmonella typhimurium strain LT2 ycfR mutants when compared to attachment of the wild type strain (Figure 4 & Table 2)

challenge
acceptableSALTY:Q7CPD62017-03-12 18:53:27 CDTGO:0043709 cell adhesion involved in single-species biofilm formation (P)PMID:23451197ECO:0000315 mutant phenotype evidence used in manual assertion

Protein: yigG

Organism: Salmonella typhimurium strain LT2 Salmonella typhimurium strain LT2 yigG mutants showed a significant decrease (P=0.0003) in attachment to polystyrene when compared to attachment of the wild type strain (Figure 4 & Table 2)

challenge
acceptableSALET:A0A0F7J8322017-03-25 18:23:50 CDTGO:0043709 cell adhesion involved in single-species biofilm formation (P)PMID:23451197ECO:0000315 mutant phenotype evidence used in manual assertion

Protein: ycfR

Organism: Salmonella enterica serovar Saintpaul strain 99A3746

As shown in Figure 4 and Table 2, ycfR mutants of Salmonella enterica serovar Saintpaul showed decreased attachment to glass surface when compared to the wild type strain (P=0.035).

challenge
unacceptableSALT1:A0A0F6B2Q62017-04-05 11:41:27 CDTGO:1900232 negative regulation of single-species biofilm formation on inanimate substrate (P)PMID:17074910ECO:0000315 mutant phenotype evidence used in manual assertion

Organism: Salmonella typhimurium strain 14028s

Protein: motA

According to figure 2, salmonella typhimurium stran 14028s mutants lacking motA exhibited lower biofilm formation than the wild type strain. Mutants did not colonize surfaces above or below the meniscus, and formed only a thin ring on the meniscus

challenge
acceptableSALT1:A0A0F6B6322017-04-05 11:49:48 CDTGO:1900233 positive regulation of single-species biofilm formation on inanimate substrate (P)PMID:17074910ECO:0000315 mutant phenotype evidence used in manual assertion

Organism: Salmonella typhimurium strain 14028s

Protein: barA

According to figure 2, salmonella typhimurium strain 14028s mutants of barA showed reduced biofilm formation when compared to wild type strain

challenge

acceptable:3
unacceptable:2
requires_changes:0
flagged:0

Annotations challenged by Ryancallahan

StatusAuthor,GroupPageGO Term (Aspect)ReferenceEvidenceLinksPage history
updatedbyinstructorJoshuakrank,
Team Moldevort
SALTS:A0A0H3NF77GO:0098864 - modification by symbiont of host tight cell-cell junction (P)PMID:25838979ECO:0000315 mutant phenotype evidence used in manual assertionchallengeC: 2
unacceptableSStone15,
Team Lily Whale
MOUSE:RABP2GO:0042573 - retinoic acid metabolic process (P)PMID:27609837ECO:0000314 direct assay evidence used in manual assertionchallengeC: 1

0 annotations fixed by Ryancallahan

What do the icons mean in the status column?

assessment icons.jpg