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TODPA:OPSD

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Species (Taxon ID) Todarodes pacificus (Japanese flying squid) (Ommastrephes pacificus). (6637)
Gene Name(s) RHO
Protein Name(s) Rhodopsin
External Links
UniProt P31356
EMBL X70498
PIR S29483
PDB 2Z73
2ZIY
3AYM
3AYN
PDBsum 2Z73
2ZIY
3AYM
3AYN
ProteinModelPortal P31356
SMR P31356
DIP DIP-60624N
EvolutionaryTrace P31356
GO GO:0016021
GO:0004930
GO:0009881
GO:0007602
GO:0018298
GO:0007601
InterPro IPR000276
IPR017452
IPR001760
IPR027430
IPR006031
Pfam PF00001
PF02162
PRINTS PR00237
PR00238
PROSITE PS00237
PS50262
PS00238

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

part_of

GO:0016021

integral component of membrane

PMID:17554166[1]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0016918

retinal binding

PMID:17554166[1]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0004930

G protein-coupled receptor activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000276

F

Seeded From UniProt

complete

involved_in

GO:0007186

G protein-coupled receptor signaling pathway

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000276
InterPro:IPR001760

P

Seeded From UniProt

complete

involved_in

GO:0007601

visual perception

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001760

P

Seeded From UniProt

complete

part_of

GO:0016021

integral component of membrane

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000276
InterPro:IPR001760
InterPro:IPR017452

C

Seeded From UniProt

complete

involved_in

GO:0007602

phototransduction

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0681

P

Seeded From UniProt

complete

involved_in

GO:0018298

protein-chromophore linkage

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0157

P

Seeded From UniProt

complete

enables

GO:0009881

photoreceptor activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0600

F

Seeded From UniProt

complete

enables

GO:0004930

G protein-coupled receptor activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0297

F

Seeded From UniProt

complete

part_of

GO:0016020

membrane

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0472
UniProtKB-SubCell:SL-0162

C

Seeded From UniProt

complete

involved_in

GO:0007601

visual perception

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0844

P

Seeded From UniProt

complete

involved_in

GO:0050896

response to stimulus

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0716

P

Seeded From UniProt

complete

part_of

GO:0016021

integral component of membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0812

C

Seeded From UniProt

complete

involved_in

GO:0007186

G protein-coupled receptor signaling pathway

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0297

P

Seeded From UniProt

complete

involved_in

GO:0007165

signal transduction

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0807

P

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 Murakami, M et al. (2007) Crystallization and crystal properties of squid rhodopsin. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 63 475-9 PubMed GONUTS page