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Cacao

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The row for this annotation cannot be found. This might be due to a row or page getting deleted.

Contributes toGO:0005975carbohydrate metabolic processPMID:4098958IDA: Inferred from Direct Assay P
This annotation made on page:
By: HPaudel (group Team Green B 2018) on 2018-03-03 21:59:39 CST.




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Entry TypeChallenging User,GroupTime/DateChallenge ReasonPoints/Assessment
Public
Assessment
Ivanerill2018-04-30 05:57:56 CDT

OK. You managed to get the paper right now, but there is really no evidence of the GO term you are annotating. If you read the text, it states: "A list of proteins with a 5-fold greater abundance in the casein/suberin-containing medium (CSM) compared to CM is shown in Table 1 ... All proteins listed have been divided into 19 functional groups based on their putative functions (Table 3)." How does that support "carbohydrate metabolic process" with IDA?

Unacceptable
Go term
Public
Assessment
DanielRenfro2018-04-15 19:05:44 CDT

This annotation has been flagged because it has been edited since last assessment

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
Contributes to GO:0005975 carbohydrate metabolic process PMID:25028574 IDA: Inferred from Direct Assay P Uniprot name is Gluconase. The authors have name assigned cellulase. This protein was identified by fractionation of the secresome from S. scabiei. The authors assigned this protein as involved in carbohydrate metabolism. Protien was isolated in the presence of casein-suberin medium in which the bacteria were in. Table 1 shows C9ZD50 isolated and assigned as cellulase. PMC id in the reference and PMID is 25028574. complete
CACAO 13096
on STRSW:C9ZD50
Flagged
Public
Assessment
Ivanerill2018-04-14 19:40:57 CDT

That's not the right fix. See https://www.ncbi.nlm.nih.gov/pmc/pmctopmid/

Requires Changes
Publication
Public
Assessment
DanielRenfro2018-03-12 10:17:45 CDT

This annotation has been flagged because it has been edited since last assessment

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
Contributes to GO:0005975 carbohydrate metabolic process other:4098958 IDA: Inferred from Direct Assay P Uniprot name is Gluconase. The authors have name assigned cellulase. This protein was identified by fractionation of the secresome from S. scabiei. The authors assigned this protein as involved in carbohydrate metabolism. Protien was isolated in the presence of casein-suberin medium in which the bacteria were in. Table 1 shows C9ZD50 isolated and assigned as cellulase. PMC id in the reference and PMID is 25028574. complete
CACAO 13096
on STRSW:C9ZD50
Flagged
Public
Assessment
DanielRenfro2018-03-12 09:19:39 CDT

This annotation has been flagged because it has been edited since last assessment

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
Contributes to GO:0005975 carbohydrate metabolic process PMID:2502874 IDA: Inferred from Direct Assay P Uniprot name is Gluconase. The authors have name assigned cellulase. This protein was identified by fractionation of the secresome from S. scabiei. The authors assigned this protein as involved in carbohydrate metabolism. Protien was isolated in the presence of casein-suberin medium in which the bacteria were in. Table 1 shows C9ZD50 isolated and assigned as cellulase. complete
CACAO 13096
on STRSW:C9ZD50
Flagged
Public
Assessment
Scaruso2018-03-08 14:49:20 CST

You have the wrong paper ID. You put up the PMCID, which leads to this paper: Montgomery, PC and Williamson, AR (1970) Molecular restriction of anti-hapten antibody elicited in neonatal rabbits. Nature 228:1306-8. That's probably not what you want people to read. The PMID is 25028574. Gotta change that for sure.


Requires Changes
Protein
Publication
Qualifier
Go term
Evidence
With/From
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Unique/Original