Cacao

Contributes to	GO:0019028	viral capsid	PMID:23840063	ISS: Inferred from Sequence Similarity UniProtKB:Q858G8	C
This annotation made on page: BPE15:Q858G8 By: Farooquenb (group Team .jpeg) on 2017-04-12 13:53:58 CDT.

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2017-04-30 22:29:41 CDT

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Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0019028	viral capsid	PMID:23840063	ISS: Inferred from Sequence Similarity	UniProtKB:Q9WR38	C	X-ray crystallographic modeling tools were used to refine gp10 models. The gp10 refined model depicts an eight-stranded jellyroll fold. Using DALI, structural similarity was determined among various viruses with the same jellyroll fold. Figure S8 shows the structural homologs of the gp10 models. Gp10 is a protein subunit of the capsid of bacteriophage, epsilon15. Part A of figure S8 shows gp10's interaction with the exposed surface and the capsid surface. According to DALI, the top score of structural similarity to the gp10 of epsilon15 was given to the projecting jellyroll domain of the virus VP2 (PDB ID: 2DF7, Z-score = 6.3). Despite a difference in its length and sequence, gp10 and 2DF7 domain structure share a similar folding pattern. The topology of these two structures are identical. The high structural match between these two structures further validates the gp10 model.	complete CACAO 12607

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2017-04-26 08:35:00 CDT

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