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Cacao

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Contributes toGO:0000746conjugationPMID:27103580IMP: Inferred from Mutant Phenotype P
This annotation made on page: ENTFL:A0A140UHJ9
By: Annaerickson (group Team Grapes of Staph II) on 2017-04-05 11:49:37 CDT.




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Entry TypeChallenging User,GroupTime/DateChallenge ReasonPoints/Assessment
Private
Assessment
Suzialeksander2017-06-15 13:14:07 CDTYou need to be an instructor to view these notes.Unacceptable
Private
Assessment
Suzialeksander2017-05-08 16:28:22 CDTYou need to be an instructor to view these notes.Requires Changes
Go term
Public
Assessment
DanielRenfro2017-04-06 22:49:10 CDT

This annotation has been flagged because it has been edited since last assessment

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0000746 conjugation PMID:27103580 IMP: Inferred from Mutant Phenotype P Supplementary Table 3 and section "TraH is an essential component in pIP501-mediated conjugation."

Although the paper didn't use the Enterococcus faecalis strain EnGen0234, the Protein Data Bank accession code mentioned in the paper matches the UniProt ID for the EnGen strain. The GO term is appropriate because a mutant strain with a deletion of the traH gene did not conjugate at a level that could be detected by the assay used. However, when the same strain received a plasmid containing a functional copy of the gene, conjugation proceeded at a normal rate.||complete
CACAO 12432

on ENTFL:A0A140UHJ9
Flagged
Public
Assessment
DanielRenfro2017-04-06 22:13:49 CDT

This annotation has been flagged because it has been edited since last assessment

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0000746 conjugation PMID:27103580 IMP: Inferred from Mutant Phenotype P Supplementary Table 3 and section "TraH is an essential component in pIP501-mediated conjugation."

Although the paper didn't use the Enterococcus faecalis strain EnGen0234, the Protein Data Bank accession code mentioned in the paper matches the UniProt ID for the EnGen strain. The GO term is appropriate because a mutant strain with a deletion of the traH gene did not conjugate at a level that could be detected by the assay used. However, when the same strain received a plasmid containing a functional copy of the gene, conjugation proceeded at a normal rate.||complete
CACAO 12432

on ENTFL:A0A140UHJ9
Flagged
Private
Assessment
Suzialeksander2017-04-06 15:42:12 CDTYou need to be an instructor to view these notes.Requires Changes
Protein
Publication
Qualifier
Evidence
With/From
Notes
Unique/Original


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Internal error - GONUTS

GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

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Internal error

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[1b24a43967517eae8dd88f96] /wiki/index.php/Special:Cacao/annotation/12432?opage=Category%3ATeam+Grapes+of+Staph+II Error from line 252 of /usr/local/github/wiki-extensions/wiki-extensions-hulab/AnnotationLinks/AnnotationLinks.php: Call to a member function getIdentifier() on null

Backtrace:

#0 /usr/local/github/wiki-extensions/wiki-extensions-hulab/AnnotationLinks/AnnotationLinks.php(70): AnnotationLinks::getQuickGOannotations(string, array)
#1 /var/www/html/go/wiki/includes/parser/Parser.php(3888): AnnotationLinks::renderAnnotations(NULL, array, Parser, PPFrame_DOM)
#2 /var/www/html/go/wiki/includes/parser/Preprocessor_DOM.php(1362): Parser->extensionSubstitution(array, PPFrame_DOM)
#3 /var/www/html/go/wiki/includes/parser/Parser.php(2942): PPFrame_DOM->expand(DOMElement, integer)
#4 /var/www/html/go/wiki/includes/parser/Parser.php(1293): Parser->replaceVariables(string)
#5 /var/www/html/go/wiki/includes/parser/Parser.php(443): Parser->internalParse(string)
#6 /var/www/html/go/wiki/includes/content/WikitextContent.php(323): Parser->parse(string, Title, ParserOptions, boolean, boolean, integer)
#7 /var/www/html/go/wiki/includes/content/AbstractContent.php(516): WikitextContent->fillParserOutput(Title, integer, ParserOptions, boolean, ParserOutput)
#8 /var/www/html/go/wiki/includes/jobqueue/jobs/RefreshLinksJob.php(231): AbstractContent->getParserOutput(Title, integer, ParserOptions, boolean)
#9 /var/www/html/go/wiki/includes/jobqueue/jobs/RefreshLinksJob.php(126): RefreshLinksJob->runForTitle(Title)
#10 /var/www/html/go/wiki/includes/jobqueue/JobRunner.php(296): RefreshLinksJob->run()
#11 /var/www/html/go/wiki/includes/jobqueue/JobRunner.php(193): JobRunner->executeJob(RefreshLinksJob, Wikimedia\Rdbms\LBFactorySimple, BufferingStatsdDataFactory, integer)
#12 /var/www/html/go/wiki/includes/MediaWiki.php(1002): JobRunner->run(array)
#13 /var/www/html/go/wiki/includes/MediaWiki.php(988): MediaWiki->triggerSyncJobs(integer, MediaWiki\Logger\LegacyLogger)
#14 /var/www/html/go/wiki/includes/MediaWiki.php(912): MediaWiki->triggerJobs()
#15 /var/www/html/go/wiki/includes/MediaWiki.php(727): MediaWiki->restInPeace(string, boolean)
#16 /var/www/html/go/wiki/includes/MediaWiki.php(750): MediaWiki->{closure}()
#17 /var/www/html/go/wiki/includes/MediaWiki.php(557): MediaWiki->doPostOutputShutdown(string)
#18 /var/www/html/go/wiki/index.php(42): MediaWiki->run()
#19 {main}

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