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Cacao

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The row for this annotation cannot be found. This might be due to a row or page getting deleted.

GO:0043708cell adhesion involved in biofilm formationPMID:23451197IMP: Inferred from Mutant Phenotype P
This annotation made on page:
By: Ryancallahan (group Team Three) on 2017-03-14 20:19:39 CDT.




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Entry TypeChallenging User,GroupTime/DateChallenge ReasonPoints/Assessment
ChallengeJoshuakrank,
Team Moldevort
2017-03-18 23:47:14 CDT

In addition to before, one of the strains used in the paper was the Typhimurium strain LT2. It was used in every single figure referenced in equal proportions to the saint paul stain. It was also the top strain listed in Table 1 and should therefore be the strain that is the focus of the annotation

0
ChallengeJoshuakrank,
Team Moldevort
2017-03-18 23:38:18 CDT

The uniprot ID should be Q8ZQ03 since the referenced figures and table 1 of this paper. Table 1 lists the bacterial strains used, which was mainly S. Typhimurium, specifically strain LT2.

0
Public
Assessment
DanielRenfro2017-03-23 19:30:54 CDT

This annotation has been flagged because it has been edited since last assessment

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0043708 cell adhesion involved in biofilm formation PMID:23451197 IMP: Inferred from Mutant Phenotype P As shown in Figure 4 and Table 2, ycfR mutants of Salmonella Saintpaul showed decreased attachment to glass surface when compared to the wild type strain (P=0.035). ycfR identified in paper as GenBank:ABAM02000001, 1706658-1706915, "SeSPA_A1690. complete
CACAO 12316
on SALET:A0A0N2BED8
Flagged
Private
Assessment
Suzialeksander2017-03-23 13:43:42 CDTYou need to be an instructor to view these notes.Requires Changes
Protein
Publication
Qualifier
Go term
Evidence
With/From
Notes
Unique/Original
Public
Assessment
Suzialeksander2017-03-23 12:16:34 CDT

Yes, but if you look at https://gowiki.tamu.edu/wiki/index.php?title=Special:Cacao/annotation/12314, you'll see that annotation has already been done. You can annotate more than 1 protein from a paper as long as there is evidence, which in this case there is. Saintpaul is fine, I'll verify the exact strain in next assessment.

No points to challenger.

Flagged