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GO:0098026virus tail, tubePMID:19285085IGC: Inferred from Genomic Context PMID:19285085 C
This annotation made on page: BPSP1:B6V2P5
By: Puthuveetilnp (group Team Atlantis) on 2016-04-18 06:14:39 CDT.



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Entry TypeChallenging User,GroupTime/DateChallenge ReasonPoints/Assessment
Private
Assessment
Suzialeksander2016-06-08 15:54:37 CDTYou need to be an instructor to view these notes.Unacceptable
Notes
Public
Assessment
DanielRenfro2016-04-26 08:15:08 CDT

This annotation has been flagged because it has been edited since last assessment

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0098026 virus tail, tube PMID:19285085 IGC: Inferred from Genomic Context UniProtKB:B6V2P4 C In this paper, specifically in the section about tail assembly proteins, the authors discuss the potential function of gene 10.1. They speculate it might be a tail tube protein because the length of gene 10.1 corresponds to a gene that codes for a tail tube protein. Additionally, figure 5 shows how the authors analyzed other homologs to show how 10.01 was a tail tube protein. complete
CACAO 11763
on BPSP1:B6V2P5
Flagged
Private
Assessment
JimHu2016-04-25 22:49:03 CDTYou need to be an instructor to view these notes.Requires Changes
Protein
Publication
Qualifier
Go term
Evidence
With/From
Notes
Unique/Original
Public
Assessment
AAJohnson2016-04-25 12:17:37 CDT

The student correctly identified the phage protein and publication. The student could improve the notes by including a key statement from the text that states the tail tube gene is usually right after tail sheath, and before tail assembly chaperone, in myoviruses. Inclusion of that statement might merit the PMID as reference? (I'm not sure) I think the "with" field should perhaps be to the uniprot ID of one of the phages in Figure 5 comparative genomics map - examination of their genbank files would show the tail tube is in the same genomic context. Reading the instructions on using IGC, the "with" field might also be the neighboring tail sheath gene. We probably need a higher level of input here.

Updated by Instructor
Protein
Publication
Go term
Evidence
Notes
Unique/Original