SYNY3:PNP

Species (Taxon ID)	Synechocystis sp. (strain PCC 6803 / Kazusa). (1111708)
Gene Name(s)	pnp (ECO:0000255 with HAMAP-Rule:MF_01595)
Protein Name(s)	Polyribonucleotide nucleotidyltransferase (ECO:0000255 with HAMAP-Rule:MF_01595) Polynucleotide phosphorylase (ECO:0000255 with HAMAP-Rule:MF_01595) PNPase (ECO:0000255 with HAMAP-Rule:MF_01595)
External Links
UniProt	P72659
EMBL	BA000022
PIR	S74509
RefSeq	NP_439981.1 YP_005650036.1 YP_007449864.1
ProteinModelPortal	P72659
IntAct	P72659
STRING	1148.sll1043
PaxDb	P72659
EnsemblBacteria	BAA16661
GeneID	953146
KEGG	syn:sll1043
PATRIC	23837032
eggNOG	COG1185
HOGENOM	HOG000218326
InParanoid	P72659
KO	K00962
OMA	RFMFHYN
OrthoDB	EOG6WT8CC
PhylomeDB	P72659
Proteomes	UP000001425
GO	GO:0005737 GO:0000175 GO:0000287 GO:0004654 GO:0003723 GO:0006402 GO:0006396
Gene3D	1.10.10.400 2.40.50.140 3.30.1370.10 3.30.230.70
HAMAP	MF_01595
InterPro	IPR001247 IPR015847 IPR004087 IPR004088 IPR012340 IPR012162 IPR027408 IPR015848 IPR003029 IPR020568 IPR022967
PANTHER	PTHR11252
Pfam	PF00013 PF03726 PF01138 PF03725 PF00575
PIRSF	PIRSF005499
SMART	SM00322 SM00316
SUPFAM	SSF50249 SSF54211 SSF54791 SSF55666
TIGRFAMs	TIGR03591
PROSITE	PS50084 PS50126

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Extension	Notes	Status
	GO:0000175	3'-5'-exoribonuclease activity	PMID:22403697	ECO:0000314			F		Figure 5: Using exoribonucleolytic activity assays, compares SynRNB of Synechocystis to RNase II and RNase R of E. coli. The ability of these proteins to degrade three synthetic substrates, a poly(A) oligomer of 30nts, a 16-mer oligoribonucleotide, and a 30-mer oligoribonucleotide, were analyzed and compared according to time.	complete
involved_in	GO:0006401	RNA catabolic process		ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN000134193 TAIR:locus:2079429 UniProtKB:Q8TCS8	P		Seeded From UniProt	complete
part_of	GO:0005829	cytosol		ECO:0000318	biological aspect of ancestor evidence used in manual assertion	EcoGene:EG10743 PANTHER:PTN000134193 UniProtKB:P9WI57 UniProtKB:Q8TCS8	C		Seeded From UniProt	complete
enables	GO:0004654	polyribonucleotide nucleotidyltransferase activity		ECO:0000318	biological aspect of ancestor evidence used in manual assertion	EcoGene:EG10743 PANTHER:PTN000134193 RGD:1307987 TAIR:locus:2079429 TAIR:locus:2222662 UniProtKB:Q8TCS8	F		Seeded From UniProt	complete
enables	GO:0000175	3'-5'-exoribonuclease activity		ECO:0000318	biological aspect of ancestor evidence used in manual assertion	EcoGene:EG10743 PANTHER:PTN000134193 TAIR:locus:2079429 TAIR:locus:2222662 UniProtKB:Q8TCS8	F		Seeded From UniProt	complete
involved_in	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic	GO_REF:0000108	ECO:0000364	evidence based on logical inference from manual annotation used in automatic assertion	GO:0000175	P		Seeded From UniProt	complete
enables	GO:0003676	nucleic acid binding	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR003029 InterPro:IPR004087	F		Seeded From UniProt	complete
enables	GO:0003723	RNA binding	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848 InterPro:IPR036612	F		Seeded From UniProt	complete
enables	GO:0004654	polyribonucleotide nucleotidyltransferase activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR012162	F		Seeded From UniProt	complete
involved_in	GO:0006396	RNA processing	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR015848	P		Seeded From UniProt	complete
involved_in	GO:0006402	mRNA catabolic process	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR012162	P		Seeded From UniProt	complete
enables	GO:0004654	polyribonucleotide nucleotidyltransferase activity	GO_REF:0000003	ECO:0000501	evidence used in automatic assertion	EC:2.7.7.8	F		Seeded From UniProt	complete
enables	GO:0000287	magnesium ion binding	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000001279	F		Seeded From UniProt	complete
enables	GO:0003723	RNA binding	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000001279	F		Seeded From UniProt	complete
enables	GO:0004654	polyribonucleotide nucleotidyltransferase activity	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000001279	F		Seeded From UniProt	complete
involved_in	GO:0006402	mRNA catabolic process	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000001279	P		Seeded From UniProt	complete
part_of	GO:0005737	cytoplasm	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000001279	C		Seeded From UniProt	complete
part_of	GO:0005737	cytoplasm	GO_REF:0000037 GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0963 UniProtKB-SubCell:SL-0086	C		Seeded From UniProt	complete
enables	GO:0016740	transferase activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0808	F		Seeded From UniProt	complete
enables	GO:0016779	nucleotidyltransferase activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0548	F		Seeded From UniProt	complete
enables	GO:0003723	RNA binding	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0694	F		Seeded From UniProt	complete
enables	GO:0046872	metal ion binding	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0479	F		Seeded From UniProt	complete
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References

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