SHIFL:RNR

Species (Taxon ID)	Shigella flexneri. (623)
Gene Name(s)	rnr (ECO:0000255 with HAMAP-Rule:MF_01895) (synonyms: vacB)
Protein Name(s)	Ribonuclease R (ECO:0000255 with HAMAP-Rule:MF_01895) RNase R (ECO:0000255 with HAMAP-Rule:MF_01895) Protein VacB
External Links
UniProt	P30851
EMBL	AE005674 AE014073 D11024
RefSeq	NP_710044.3 NP_839722.2 WP_000076311.1
ProteinModelPortal	P30851
STRING	198214.SF4334
EnsemblBacteria	AAN45751 AAP19534
GeneID	1025395 1080803
KEGG	sfl:SF4334 sfx:S4602
PATRIC	18711246
eggNOG	COG0557
HOGENOM	HOG000071120
KO	K12573
OrthoDB	EOG6Q5NRD
Proteomes	UP000001006 UP000002673
GO	GO:0005737 GO:0008859 GO:0003723 GO:0009405
Gene3D	2.40.50.140
HAMAP	MF_01895
InterPro	IPR011129 IPR012340 IPR003029 IPR013223 IPR022966 IPR004476 IPR011805 IPR013668 IPR022967
Pfam	PF08461 PF08206 PF00575
SMART	SM00357 SM00316
SUPFAM	SSF50249
TIGRFAMs	TIGR00358 TIGR02063
PROSITE	PS01175 PS50126

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Extension	Notes	Status
involved_in	GO:0090305	nucleic acid phosphodiester bond hydrolysis	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0004518	P		Seeded From UniProt	complete
involved_in	GO:0090305	nucleic acid phosphodiester bond hydrolysis	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0004527	P		Seeded From UniProt	complete
involved_in	GO:0090305	nucleic acid phosphodiester bond hydrolysis	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0004518	P		Seeded From UniProt	complete
involved_in	GO:0090501	RNA phosphodiester bond hydrolysis	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0004540	P		Seeded From UniProt	complete
involved_in	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0008859	P		Seeded From UniProt	complete
involved_in	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0008859	P		Seeded From UniProt	complete
enables	GO:0003676	nucleic acid binding	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR003029 InterPro:IPR011129	F		Seeded From UniProt	complete
enables	GO:0003723	RNA binding	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR001900 InterPro:IPR004476 InterPro:IPR011805	F		Seeded From UniProt	complete
enables	GO:0004518	nuclease activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR011805	F		Seeded From UniProt	complete
enables	GO:0004540	ribonuclease activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR001900 InterPro:IPR004476	F		Seeded From UniProt	complete
involved_in	GO:0016070	RNA metabolic process	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR004476	P		Seeded From UniProt	complete
enables	GO:0008859	exoribonuclease II activity	GO_REF:0000003	ECO:0000501	evidence used in automatic assertion	EC:3.1.13.1	F		Seeded From UniProt	complete
enables	GO:0008859	exoribonuclease II activity	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000056594	F		Seeded From UniProt	complete
enables	GO:0003723	RNA binding	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000056594	F		Seeded From UniProt	complete
part_of	GO:0005737	cytoplasm	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000056594	C		Seeded From UniProt	complete
involved_in	GO:0016070	RNA metabolic process	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000056594	P		Seeded From UniProt	complete
part_of	GO:0005737	cytoplasm	GO_REF:0000037 GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0963 UniProtKB-SubCell:SL-0086	C		Seeded From UniProt	complete
involved_in	GO:0009405	pathogenesis	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0843	P		Seeded From UniProt	complete
enables	GO:0004527	exonuclease activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0269	F		Seeded From UniProt	complete
enables	GO:0004518	nuclease activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0540	F		Seeded From UniProt	complete
enables	GO:0003723	RNA binding	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0694	F		Seeded From UniProt	complete
enables	GO:0016787	hydrolase activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0378	F		Seeded From UniProt	complete
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References

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