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SALTY:RLPA

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Species (Taxon ID) Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720). (99287)
Gene Name(s) rlpA
Protein Name(s) Rare lipoprotein A
External Links
UniProt Q8ZR01
EMBL AE006468
RefSeq NP_459630.1
ProteinModelPortal Q8ZR01
STRING 99287.STM0638
PaxDb Q8ZR01
PRIDE Q8ZR01
EnsemblBacteria AAL19589
GeneID 1252158
KEGG stm:STM0638
PATRIC 32379627
eggNOG COG0797
HOGENOM HOG000117956
KO K03642
OMA QSFIAVA
OrthoDB EOG6ZH2CB
BioCyc SENT99287:GCTI-641-MONOMER
Proteomes UP000001014
GO GO:0005886
Gene3D 3.30.70.1070
InterPro IPR009009
IPR012997
IPR007730
Pfam PF03330
PF05036
SUPFAM SSF110997
SSF50685
TIGRFAMs TIGR00413
PROSITE PS51257
PS51724

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0009279

cell outer membrane

PMID:20149234[1]

ECO:0000314

C

Additional file 2: Comparison of the outer membrane proteins identified

complete

part_of

GO:0009279

cell outer membrane

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

EcoGene:EG10854
PANTHER:PTN002149762
UniProtKB:Q8ZR01

C

Seeded From UniProt

complete

enables

GO:0016829

lyase activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR034718

F

Seeded From UniProt

complete

enables

GO:0042834

peptidoglycan binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR007730
InterPro:IPR036680

F

Seeded From UniProt

complete

involved_in

GO:0000270

peptidoglycan metabolic process

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000375593

P

Seeded From UniProt

complete

enables

GO:0008932

lytic endotransglycosylase activity

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000375593

F

Seeded From UniProt

complete

part_of

GO:0016020

membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0472

C

Seeded From UniProt

complete

involved_in

GO:0071555

cell wall organization

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0961

P

Seeded From UniProt

complete

enables

GO:0016829

lyase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0456

F

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-1003
UniProtKB-SubCell:SL-0039

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. Chooneea, D et al. (2010) Elucidation of the outer membrane proteome of Salmonella enterica serovar Typhimurium utilising a lipid-based protein immobilization technique. BMC Microbiol. 10 44 PubMed GONUTS page
  2. Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page