GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
SALTY:OMPD
Contents
| Species (Taxon ID) | Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720). (99287) | |
| Gene Name(s) | ompD (synonyms: nmpC) | |
| Protein Name(s) | Outer membrane porin protein OmpD | |
| External Links | ||
| UniProt | P37592 | |
| EMBL | AE006468 D26057 | |
| RefSeq | NP_460531.1 | |
| ProteinModelPortal | P37592 | |
| SMR | P37592 | |
| IntAct | P37592 | |
| STRING | 99287.STM1572 | |
| PRIDE | P37592 | |
| EnsemblBacteria | AAL20490 | |
| GeneID | 1253090 | |
| KEGG | stm:STM1572 | |
| PATRIC | 32381646 | |
| HOGENOM | HOG000272406 | |
| KO | K16076 | |
| OMA | KLEIGGR | |
| OrthoDB | EOG65J4ZQ | |
| PhylomeDB | P37592 | |
| BioCyc | SENT99287:GCTI-1582-MONOMER | |
| Proteomes | UP000001014 | |
| GO | GO:0009279 GO:0046930 GO:0015288 GO:0006811 | |
| Gene3D | 2.40.160.10 | |
| InterPro | IPR017690 IPR023614 IPR001897 IPR001702 IPR013793 | |
| Pfam | PF00267 | |
| PRINTS | PR00183 PR00182 | |
| TIGRFAMs | TIGR03304 | |
| PROSITE | PS00576 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0009279 |
cell outer membrane |
ECO:0000314 |
C |
Additional file 2: Comparison of the outer membrane proteins identified |
complete | |||||
|
enables |
GO:0015288 |
porin activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016020 |
membrane |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0055085 |
transmembrane transport |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016021 |
integral component of membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016020 |
membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0015288 |
porin activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006811 |
ion transport |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0009279 |
cell outer membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0046930 |
pore complex |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Chooneea, D et al. (2010) Elucidation of the outer membrane proteome of Salmonella enterica serovar Typhimurium utilising a lipid-based protein immobilization technique. BMC Microbiol. 10 44 PubMed GONUTS page
b