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SALTY:OMPD

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Species (Taxon ID) Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720). (99287)
Gene Name(s) ompD (synonyms: nmpC)
Protein Name(s) Outer membrane porin protein OmpD
External Links
UniProt P37592
EMBL AE006468
D26057
RefSeq NP_460531.1
ProteinModelPortal P37592
SMR P37592
IntAct P37592
STRING 99287.STM1572
PRIDE P37592
EnsemblBacteria AAL20490
GeneID 1253090
KEGG stm:STM1572
PATRIC 32381646
HOGENOM HOG000272406
KO K16076
OMA KLEIGGR
OrthoDB EOG65J4ZQ
PhylomeDB P37592
BioCyc SENT99287:GCTI-1582-MONOMER
Proteomes UP000001014
GO GO:0009279
GO:0046930
GO:0015288
GO:0006811
Gene3D 2.40.160.10
InterPro IPR017690
IPR023614
IPR001897
IPR001702
IPR013793
Pfam PF00267
PRINTS PR00183
PR00182
TIGRFAMs TIGR03304
PROSITE PS00576

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0009279

cell outer membrane

PMID:20149234[1]

ECO:0000314

C

Additional file 2: Comparison of the outer membrane proteins identified

complete

enables

GO:0015288

porin activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001702
InterPro:IPR001897
InterPro:IPR033900

F

Seeded From UniProt

complete

part_of

GO:0016020

membrane

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001702
InterPro:IPR001897
InterPro:IPR033900

C

Seeded From UniProt

complete

involved_in

GO:0055085

transmembrane transport

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001702
InterPro:IPR001897

P

Seeded From UniProt

complete

part_of

GO:0016021

integral component of membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0812

C

Seeded From UniProt

complete

part_of

GO:0016020

membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0472

C

Seeded From UniProt

complete

enables

GO:0015288

porin activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0626

F

Seeded From UniProt

complete

involved_in

GO:0006811

ion transport

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0406

P

Seeded From UniProt

complete

part_of

GO:0009279

cell outer membrane

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0998
UniProtKB-SubCell:SL-0040

C

Seeded From UniProt

complete

part_of

GO:0046930

pore complex

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0626

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. Chooneea, D et al. (2010) Elucidation of the outer membrane proteome of Salmonella enterica serovar Typhimurium utilising a lipid-based protein immobilization technique. BMC Microbiol. 10 44 PubMed GONUTS page