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SALTY:OMPA

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Species (Taxon ID) Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720). (99287)
Gene Name(s) ompA
Protein Name(s) Outer membrane protein A

Outer membrane major heat-modifiable protein Outer membrane protein 33K

External Links
UniProt P02936
EMBL X02006
AE006468
PIR A03436
RefSeq NP_460044.1
ProteinModelPortal P02936
SMR P02936
STRING 99287.STM1070
PaxDb P02936
PRIDE P02936
EnsemblBacteria AAL20003
GeneID 1252588
KEGG stm:STM1070
PATRIC 32380577
eggNOG COG2885
HOGENOM HOG000274199
KO K03286
OMA EYALTKN
OrthoDB EOG6PP9QB
PhylomeDB P02936
BioCyc SENT99287:GCTI-1079-MONOMER
Proteomes UP000001014
GO GO:0009279
GO:0046930
GO:0015288
GO:0005198
GO:0000746
GO:0006811
Gene3D 2.40.160.20
3.30.1330.60
InterPro IPR011250
IPR006664
IPR002368
IPR006690
IPR000498
IPR006665
Pfam PF00691
PF01389
PRINTS PR01021
PR01022
SUPFAM SSF103088
SSF56925
PROSITE PS01068
PS51123

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0009279

cell outer membrane

PMID:20149234[1]

ECO:0000314

C

Additional file 2: Comparison of the outer membrane proteins identified

complete

part_of

GO:0009279

cell outer membrane

PMID:21873635[2]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

EcoGene:EG10669
EcoGene:EG10684
PANTHER:PTN002013697
UniProtKB:P02936

C

Seeded From UniProt

complete

involved_in

GO:0055085

transmembrane transport

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0015288

P

Seeded From UniProt

complete

enables

GO:0005198

structural molecule activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR002368

F

Seeded From UniProt

complete

part_of

GO:0009279

cell outer membrane

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000498
InterPro:IPR002368
InterPro:IPR006664
InterPro:IPR006690

C

Seeded From UniProt

complete

part_of

GO:0016021

integral component of membrane

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000498
InterPro:IPR002368
InterPro:IPR006664
InterPro:IPR006690

C

Seeded From UniProt

complete

part_of

GO:0016021

integral component of membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0812

C

Seeded From UniProt

complete

involved_in

GO:0006811

ion transport

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0406

P

Seeded From UniProt

complete

part_of

GO:0016020

membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0472

C

Seeded From UniProt

complete

part_of

GO:0009279

cell outer membrane

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0998
UniProtKB-SubCell:SL-0040

C

Seeded From UniProt

complete

involved_in

GO:0000746

conjugation

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0184

P

Seeded From UniProt

complete

enables

GO:0015288

porin activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0626

F

Seeded From UniProt

complete

part_of

GO:0046930

pore complex

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0626

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. Chooneea, D et al. (2010) Elucidation of the outer membrane proteome of Salmonella enterica serovar Typhimurium utilising a lipid-based protein immobilization technique. BMC Microbiol. 10 44 PubMed GONUTS page
  2. Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page