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SALTY:FIMD
Contents
| Species (Taxon ID) | Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720). (99287) | |
| Gene Name(s) | fimD | |
| Protein Name(s) | Outer membrane usher protein FimD | |
| External Links | ||
| UniProt | P37924 | |
| EMBL | L19338 AE006468 | |
| RefSeq | NP_459541.1 | |
| ProteinModelPortal | P37924 | |
| STRING | 99287.STM0546 | |
| PaxDb | P37924 | |
| PRIDE | P37924 | |
| EnsemblBacteria | AAL19500 | |
| GeneID | 1252066 | |
| KEGG | stm:STM0546 | |
| PATRIC | 32379435 | |
| eggNOG | COG3188 | |
| HOGENOM | HOG000111414 | |
| KO | K07347 | |
| OMA | GSASANW | |
| OrthoDB | EOG6GJBP9 | |
| PhylomeDB | P37924 | |
| BioCyc | SENT99287:GCTI-549-MONOMER | |
| Proteomes | UP000001014 | |
| GO | GO:0009279 GO:0016021 GO:0005215 | |
| InterPro | IPR000015 IPR018030 IPR025949 IPR025885 | |
| PANTHER | PTHR30451 | |
| Pfam | PF13953 PF13954 PF00577 | |
| PROSITE | PS01151 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0009279 |
cell outer membrane |
ECO:0000314 |
C |
Additional file 2: Comparison of the outer membrane proteins identified |
complete | |||||
|
enables |
GO:0015473 |
fimbrial usher porin activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10311 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0009297 |
pilus assembly |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10311 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0009279 |
cell outer membrane |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10311 |
C |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0055085 |
transmembrane transport |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0015473 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0055085 |
transmembrane transport |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0015473 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0009297 |
pilus assembly |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0015473 |
fimbrial usher porin activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016020 |
membrane |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016021 |
integral component of membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0009279 |
cell outer membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016020 |
membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Chooneea, D et al. (2010) Elucidation of the outer membrane proteome of Salmonella enterica serovar Typhimurium utilising a lipid-based protein immobilization technique. BMC Microbiol. 10 44 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
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