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RAT:SYT1

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Species (Taxon ID) Rattus norvegicus (Rat). (10116)
Gene Name(s) Syt1
Protein Name(s) Synaptotagmin-1

Synaptotagmin I SytI p65

External Links
UniProt P21707
EMBL X52772
AJ617615
DQ181550
PIR S09595
RefSeq NP_001028852.2
XP_017450168.1
UniGene Rn.216272
PDB 1BYN
1K5W
1RSY
1TJM
1TJX
1UOV
1UOW
2YOA
4WEE
5CCG
5CCH
5CCI
5CCJ
5KJ7
5KJ8
5W5C
5W5D
PDBsum 1BYN
1K5W
1RSY
1TJM
1TJX
1UOV
1UOW
2YOA
4WEE
5CCG
5CCH
5CCI
5CCJ
5KJ7
5KJ8
5W5C
5W5D
ProteinModelPortal P21707
SMR P21707
BioGrid 247745
CORUM P21707
DIP DIP-29064N
IntAct P21707
MINT P21707
STRING 10116.ENSRNOP00000049624
iPTMnet P21707
PhosphoSitePlus P21707
SwissPalm P21707
PaxDb P21707
PRIDE P21707
Ensembl ENSRNOT00000048880
ENSRNOT00000088950
GeneID 25716
KEGG rno:25716
UCSC RGD:3803
CTD 6857
RGD 3803
eggNOG ENOG410IT3Q
ENOG410Z15P
GeneTree ENSGT00760000118973
HOGENOM HOG000232127
HOVERGEN HBG005010
InParanoid P21707
KO K15290
OMA HDIIGEY
OrthoDB EOG091G0XMQ
PhylomeDB P21707
TreeFam TF315600
Reactome R-RNO-181429
R-RNO-181430
R-RNO-210500
R-RNO-212676
R-RNO-264642
R-RNO-8856825
R-RNO-8856828
R-RNO-888590
EvolutionaryTrace P21707
PRO PR:P21707
Proteomes UP000002494
Bgee ENSRNOG00000006426
Genevisible P21707
GO GO:0030424
GO:0030054
GO:0042584
GO:0005737
GO:0031045
GO:0060076
GO:0070382
GO:0098978
GO:0005794
GO:0098686
GO:0030285
GO:0043229
GO:0044306
GO:0005886
GO:0042734
GO:0030141
GO:0008021
GO:0030672
GO:0043195
GO:0005509
GO:0005544
GO:0048306
GO:0005516
GO:0030276
GO:0042802
GO:0050750
GO:0005546
GO:0001786
GO:0005543
GO:0008022
GO:0046982
GO:0042803
GO:0000149
GO:0019905
GO:0017075
GO:0030348
GO:0007420
GO:0017156
GO:0048791
GO:0099502
GO:0071277
GO:0005513
GO:0098746
GO:0045956
GO:1903861
GO:0050806
GO:0031340
GO:0051291
GO:0051260
GO:0017158
GO:0014059
GO:1903305
GO:0051966
GO:0051592
GO:0048488
GO:0016079
GO:0048278
GO:0016192
Gene3D 2.60.40.150
InterPro IPR000008
IPR035892
IPR001565
IPR015428
PANTHER PTHR10024:SF239
Pfam PF00168
PRINTS PR00360
PR00399
SMART SM00239
PROSITE PS50004

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0033603

dopamine secretion

PMID:28370453[1]

ECO:0000315

P

Figure 4c shows that in the absence of RAB3a the dopamine content was significantly lower after the SYT1 knockdown when compared to figure 2c - without the SYT 1 knockdown. The proteins are taken from rats.

complete
CACAO 13419

part_of

GO:0030672

synaptic vesicle membrane

PMID:23792689[2]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0005543

phospholipid binding

PMID:9830048[3]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0051260

protein homooligomerization

PMID:9830048[3]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P21707

P

occurs_in:(UBERON:0000955)

Seeded From UniProt

complete

involved_in

GO:0051291

protein heterooligomerization

PMID:9830048[3]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P50232

P

occurs_in:(UBERON:0000955)

Seeded From UniProt

complete

part_of

GO:0044306

neuron projection terminus

PMID:10397765[4]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0030348

syntaxin-3 binding

PMID:10397765[4]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:Q08849

F

Seeded From UniProt

complete

enables

GO:0019905

syntaxin binding

PMID:10397765[4]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:Q08850

F

Seeded From UniProt

complete

enables

GO:0048306

calcium-dependent protein binding

PMID:10397765[4]

ECO:0000314

direct assay evidence used in manual assertion

F

has_direct_input:(UniProtKB:P32851)|has_direct_input:(UniProtKB:Q08850)|has_direct_input:(UniProtKB:P50279)|has_direct_input:(UniProtKB:Q08849)

Seeded From UniProt

complete

enables

GO:0046982

protein heterodimerization activity

PMID:10397765[4]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P50232

F

Seeded From UniProt

complete

involved_in

GO:0031340

positive regulation of vesicle fusion

PMID:20688915[5]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0000149

SNARE binding

PMID:20688915[5]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P32851,UniProtKB:P60881

F

Seeded From UniProt

complete

enables

GO:0019905

syntaxin binding

PMID:10397765[4]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P50279

F

Seeded From UniProt

complete

enables

GO:0017075

syntaxin-1 binding

PMID:10397765[4]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P32851

F

Seeded From UniProt

complete

enables

GO:0001786

phosphatidylserine binding

PMID:20688915[5]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0048306

calcium-dependent protein binding

PMID:20688915[5]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0005546

phosphatidylinositol-4,5-bisphosphate binding

PMID:12860971[6]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0017158

regulation of calcium ion-dependent exocytosis

PMID:12860971[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0000149

SNARE binding

PMID:12860971[6]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0001786

phosphatidylserine binding

PMID:12860971[6]

ECO:0000314

direct assay evidence used in manual assertion

F

activated_by:(CHEBI:29108)

Seeded From UniProt

complete

part_of

GO:0008021

synaptic vesicle

PMID:17110340[7]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0048306

calcium-dependent protein binding

PMID:9830048[3]

ECO:0000314

direct assay evidence used in manual assertion

F

has_direct_input:(UniProtKB:P50232)|has_direct_input:(UniProtKB:P21707)|has_direct_input:(UniProtKB:P40748)

Seeded From UniProt

complete

involved_in

GO:0051291

protein heterooligomerization

PMID:9830048[3]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P40748

P

occurs_in:(UBERON:0000955)

Seeded From UniProt

complete

part_of

GO:0030285

integral component of synaptic vesicle membrane

PMID:17110340[7]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0071277

cellular response to calcium ion

PMID:12526776[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0043195

terminal bouton

PMID:24876496[9]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

part_of:(UBERON:0000955)

Seeded From UniProt

complete

involved_in

GO:0051966

regulation of synaptic transmission, glutamatergic

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P46096

P

occurs_in:(CL:0002608)

Seeded From UniProt

complete

involved_in

GO:0098746

fast, calcium ion-dependent exocytosis of neurotransmitter

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P46096

P

occurs_in:(CL:0002608)

Seeded From UniProt

complete

involved_in

GO:0050806

positive regulation of synaptic transmission

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P46096

P

occurs_in:(CL:1001571)

Seeded From UniProt

complete

involved_in

GO:0098746

fast, calcium ion-dependent exocytosis of neurotransmitter

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P46096

P

occurs_in:(CL:1001571)

Seeded From UniProt

complete

enables

GO:0017075

syntaxin-1 binding

PMID:12526776[8]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0000149

SNARE binding

PMID:12526776[8]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P63045

F

occurs_in:(UBERON:0000955)

Seeded From UniProt

complete

enables

GO:0000149

SNARE binding

PMID:12526776[8]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P60881

F

occurs_in:(UBERON:0000955)

Seeded From UniProt

complete

enables

GO:0005544

calcium-dependent phospholipid binding

PMID:8253763[10]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:1903305

regulation of regulated secretory pathway

PMID:12526776[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

occurs_in:(CL:0000165)

Seeded From UniProt

complete

colocalizes_with

GO:0031201

SNARE complex

PMID:23949442[11]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0060076

excitatory synapse

PMID:19730411[12]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0030276

clathrin binding

PMID:7791877[13]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0019905

syntaxin binding

PMID:7791877[13]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0008021

synaptic vesicle

PMID:18179895[14]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

PMID:18179895[14]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0005544

calcium-dependent phospholipid binding

PMID:7791877[13]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0098686

hippocampal mossy fiber to CA3 synapse

PMID:7298720[15]

ECO:0006003

electron microscopy evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0098686

hippocampal mossy fiber to CA3 synapse

PMID:7298720[15]

ECO:0001232

microscopy evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0030285

integral component of synaptic vesicle membrane

PMID:7298720[15]

ECO:0006003

electron microscopy evidence used in manual assertion

C

part_of:(UBERON:0002037)

Seeded From UniProt

complete

part_of

GO:0030285

integral component of synaptic vesicle membrane

PMID:7298720[15]

ECO:0006003

electron microscopy evidence used in manual assertion

C

part_of:(GO:0098686)

Seeded From UniProt

complete

part_of

GO:0030285

integral component of synaptic vesicle membrane

PMID:7298720[15]

ECO:0001232

microscopy evidence used in manual assertion

C

part_of:(UBERON:0002037)

Seeded From UniProt

complete

part_of

GO:0030285

integral component of synaptic vesicle membrane

PMID:7298720[15]

ECO:0001232

microscopy evidence used in manual assertion

C

part_of:(GO:0098686)

Seeded From UniProt

complete

enables

GO:0008022

protein C-terminus binding

PMID:19132534[16]

ECO:0000353

physical interaction evidence used in manual assertion

RGD:70945

F

Seeded From UniProt

complete

involved_in

GO:0007420

brain development

PMID:8872307[17]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0005546

phosphatidylinositol-4,5-bisphosphate binding

PMID:22447935[18]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0005544

calcium-dependent phospholipid binding

PMID:22711810[19]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0005543

phospholipid binding

PMID:2333096[20]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0005516

calmodulin binding

PMID:2333096[20]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0005513

detection of calcium ion

PMID:22229667[21]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0005513

detection of calcium ion

PMID:21551071[22]

ECO:0000305

curator inference used in manual assertion

GO:0045956

P

Seeded From UniProt

complete

enables

GO:0005509

calcium ion binding

PMID:22711810[19]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0005509

calcium ion binding

PMID:22447935[18]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0005509

calcium ion binding

PMID:15340165[23]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0001786

phosphatidylserine binding

PMID:18508778[24]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0000149

SNARE binding

PMID:22711810[19]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0000149

SNARE binding

PMID:19132534[16]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0000149

SNARE binding

PMID:18508778[24]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0051592

response to calcium ion

PMID:18508778[24]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0048306

calcium-dependent protein binding

PMID:22711810[19]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0048278

vesicle docking

PMID:22229667[21]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045956

positive regulation of calcium ion-dependent exocytosis

PMID:21551071[22]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0043229

intracellular organelle

PMID:10340764[25]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0031340

positive regulation of vesicle fusion

PMID:18508778[24]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0031045

dense core granule

PMID:21551071[22]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0031045

dense core granule

PMID:11751925[26]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0030141

secretory granule

PMID:15015935[27]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0017158

regulation of calcium ion-dependent exocytosis

PMID:17686463[28]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0017158

regulation of calcium ion-dependent exocytosis

PMID:11751925[26]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0017075

syntaxin-1 binding

PMID:22711810[19]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0071277

cellular response to calcium ion

PMID:21873635[29]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000001283
RGD:3803

P

Seeded From UniProt

complete

part_of

GO:0070382

exocytic vesicle

PMID:21873635[29]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:1859546
PANTHER:PTN000001284
RGD:68397

C

Seeded From UniProt

complete

involved_in

GO:0048791

calcium ion-regulated exocytosis of neurotransmitter

PMID:21873635[29]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0004242
PANTHER:PTN000797569

P

Seeded From UniProt

complete

involved_in

GO:0048488

synaptic vesicle endocytosis

PMID:21873635[29]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0004242
PANTHER:PTN000797569

P

Seeded From UniProt

complete

part_of

GO:0031045

dense core granule

PMID:21873635[29]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:1926368
MGI:MGI:99667
PANTHER:PTN000740739
RGD:3803
WB:WBGene00004922

C

Seeded From UniProt

complete

part_of

GO:0030672

synaptic vesicle membrane

PMID:21873635[29]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:99667
PANTHER:PTN000740739
RGD:3803

C

Seeded From UniProt

complete

part_of

GO:0030424

axon

PMID:21873635[29]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:99666
MGI:MGI:99667
PANTHER:PTN000740739

C

Seeded From UniProt

complete

enables

GO:0030276

clathrin binding

PMID:21873635[29]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000001283
RGD:3803
RGD:3805
RGD:3806
RGD:68397
RGD:68399
UniProtKB:Q5T7P8

F

Seeded From UniProt

complete

enables

GO:0019905

syntaxin binding

PMID:21873635[29]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000797569
RGD:3803
RGD:3804
RGD:3806
RGD:68399

F

Seeded From UniProt

complete

enables

GO:0019905

syntaxin binding

PMID:21873635[29]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000797569
RGD:3803
RGD:3804
RGD:3806

F

Seeded From UniProt

complete

involved_in

GO:0017158

regulation of calcium ion-dependent exocytosis

PMID:21873635[29]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:101759
MGI:MGI:1859545
MGI:MGI:1859546
MGI:MGI:1926368
MGI:MGI:1926373
MGI:MGI:99666
MGI:MGI:99667
PANTHER:PTN000001283
RGD:3803
RGD:3805
RGD:62013
RGD:621169
RGD:68397

P

Seeded From UniProt

complete

involved_in

GO:0017156

calcium ion regulated exocytosis

PMID:21873635[29]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000001283
RGD:62013

P

Seeded From UniProt

complete

involved_in

GO:0016192

vesicle-mediated transport

PMID:21873635[29]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0004242
MGI:MGI:1933945
PANTHER:PTN000001284

P

Seeded From UniProt

complete

involved_in

GO:0016079

synaptic vesicle exocytosis

PMID:21873635[29]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:99667
PANTHER:PTN000797569

P

Seeded From UniProt

complete

involved_in

GO:0014059

regulation of dopamine secretion

PMID:21873635[29]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:101759
MGI:MGI:1859545
MGI:MGI:99667
PANTHER:PTN000001283

P

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

PMID:21873635[29]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0261089
MGI:MGI:101759
MGI:MGI:1859544
MGI:MGI:99666
PANTHER:PTN000001284
RGD:3803
RGD:62013
UniProtKB:Q9H2B2

C

Seeded From UniProt

complete

enables

GO:0005544

calcium-dependent phospholipid binding

PMID:21873635[29]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0004242
FB:FBgn0028400
MGI:MGI:101759
MGI:MGI:1859544
MGI:MGI:1859545
MGI:MGI:1926368
MGI:MGI:99665
MGI:MGI:99666
MGI:MGI:99667
PANTHER:PTN000001283
RGD:3803
RGD:3804
RGD:3805
RGD:3806
RGD:62013
RGD:62042
RGD:68397
RGD:68399
UniProtKB:Q5T7P8

F

Seeded From UniProt

complete

enables

GO:0005544

calcium-dependent phospholipid binding

PMID:21873635[29]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0004242
FB:FBgn0028400
MGI:MGI:101759
MGI:MGI:1859544
MGI:MGI:1859545
MGI:MGI:1926368
MGI:MGI:99665
MGI:MGI:99666
MGI:MGI:99667
PANTHER:PTN000001283
RGD:3803
RGD:3804
RGD:3805
RGD:3806
RGD:62013

F

Seeded From UniProt

complete

enables

GO:0005509

calcium ion binding

PMID:21873635[29]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0004242
MGI:MGI:101759
MGI:MGI:1859546
MGI:MGI:99666
MGI:MGI:99667
PANTHER:PTN000001283
RGD:3803
UniProtKB:O00445

F

Seeded From UniProt

complete

enables

GO:0005509

calcium ion binding

PMID:21873635[29]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0004242
MGI:MGI:101759
MGI:MGI:1859546
MGI:MGI:99666
MGI:MGI:99667
PANTHER:PTN000001283
RGD:3803
RGD:62042
RGD:68397
UniProtKB:O00445

F

Seeded From UniProt

complete

enables

GO:0001786

phosphatidylserine binding

PMID:21873635[29]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0004242
FB:FBgn0028400
MGI:MGI:1859544
MGI:MGI:1859545
MGI:MGI:1859546
MGI:MGI:1926368
MGI:MGI:1926373
MGI:MGI:99666
PANTHER:PTN000001283
RGD:3803
RGD:3805
RGD:68397

F

Seeded From UniProt

complete

enables

GO:0001786

phosphatidylserine binding

PMID:21873635[29]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0004242
FB:FBgn0028400
MGI:MGI:1859544
MGI:MGI:1859545
MGI:MGI:1859546
MGI:MGI:1926368
MGI:MGI:1926373
MGI:MGI:99666
PANTHER:PTN000001283
RGD:3803
RGD:3805

F

Seeded From UniProt

complete

enables

GO:0000149

SNARE binding

PMID:21873635[29]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0004242
FB:FBgn0028400
MGI:MGI:1859545
MGI:MGI:1859546
MGI:MGI:1859547
MGI:MGI:1926368
MGI:MGI:1926373
PANTHER:PTN000001283
RGD:3803
RGD:3805
RGD:68397

F

Seeded From UniProt

complete

part_of

GO:0031045

dense core granule

PMID:22366033[30]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:10967100[31]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0042802

identical protein binding

PMID:9830048[3]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P21707

F

Seeded From UniProt

complete

involved_in

GO:1903861

positive regulation of dendrite extension

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P21579
ensembl:ENSP00000261205

P

Seeded From UniProt

complete

enables

GO:0050750

low-density lipoprotein particle receptor binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P21579
ensembl:ENSP00000261205

F

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P21579
ensembl:ENSP00000261205

C

Seeded From UniProt

complete

involved_in

GO:0099502

calcium-dependent activation of synaptic vesicle fusion

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P46096
ensembl:ENSMUSP00000100912

P

Seeded From UniProt

complete

part_of

GO:0098978

glutamatergic synapse

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P46096
ensembl:ENSMUSP00000100912

C

Seeded From UniProt

complete

involved_in

GO:0098746

fast, calcium ion-dependent exocytosis of neurotransmitter

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P46096
ensembl:ENSMUSP00000100912

P

Seeded From UniProt

complete

involved_in

GO:0051966

regulation of synaptic transmission, glutamatergic

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P46096
ensembl:ENSMUSP00000100912

P

Seeded From UniProt

complete

involved_in

GO:0050806

positive regulation of synaptic transmission

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P46096
ensembl:ENSMUSP00000100912

P

Seeded From UniProt

complete

enables

GO:0048306

calcium-dependent protein binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P46096
ensembl:ENSMUSP00000100912

F

Seeded From UniProt

complete

part_of

GO:0043005

neuron projection

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P46096
ensembl:ENSMUSP00000100912

C

Seeded From UniProt

complete

part_of

GO:0042734

presynaptic membrane

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P46096
ensembl:ENSMUSP00000100912

C

Seeded From UniProt

complete

part_of

GO:0031045

dense core granule

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P46096
ensembl:ENSMUSP00000100912

C

Seeded From UniProt

complete

part_of

GO:0030672

synaptic vesicle membrane

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P46096
ensembl:ENSMUSP00000100912

C

Seeded From UniProt

complete

part_of

GO:0030424

axon

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P46096
ensembl:ENSMUSP00000100912

C

Seeded From UniProt

complete

part_of

GO:0030141

secretory granule

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P46096
ensembl:ENSMUSP00000100912

C

Seeded From UniProt

complete

involved_in

GO:0017158

regulation of calcium ion-dependent exocytosis

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P46096
ensembl:ENSMUSP00000100912

P

Seeded From UniProt

complete

enables

GO:0017075

syntaxin-1 binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P46096
ensembl:ENSMUSP00000100912

F

Seeded From UniProt

complete

involved_in

GO:0016079

synaptic vesicle exocytosis

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P46096
ensembl:ENSMUSP00000100912

P

Seeded From UniProt

complete

involved_in

GO:0014059

regulation of dopamine secretion

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P46096
ensembl:ENSMUSP00000100912

P

Seeded From UniProt

complete

part_of

GO:0008021

synaptic vesicle

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P46096
ensembl:ENSMUSP00000100912

C

Seeded From UniProt

complete

involved_in

GO:0007269

neurotransmitter secretion

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P46096
ensembl:ENSMUSP00000100912

P

Seeded From UniProt

complete

part_of

GO:0005794

Golgi apparatus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P46096
ensembl:ENSMUSP00000100912

C

Seeded From UniProt

complete

enables

GO:0005544

calcium-dependent phospholipid binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P46096
ensembl:ENSMUSP00000100912

F

Seeded From UniProt

complete

enables

GO:0005509

calcium ion binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P46096
ensembl:ENSMUSP00000100912

F

Seeded From UniProt

complete

enables

GO:0005544

calcium-dependent phospholipid binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR015428

F

Seeded From UniProt

complete

involved_in

GO:0007269

neurotransmitter secretion

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR015428

P

Seeded From UniProt

complete

part_of

GO:0008021

synaptic vesicle

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR015428

C

Seeded From UniProt

complete

part_of

GO:0016020

membrane

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001565

C

Seeded From UniProt

complete

enables

GO:0042803

protein homodimerization activity

PMID:10397765[4]

ECO:0000304

author statement supported by traceable reference used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:2333096[20]

ECO:0000304

author statement supported by traceable reference used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0005509

calcium ion binding

PMID:2333096[20]

ECO:0000304

author statement supported by traceable reference used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0030672

synaptic vesicle membrane

PMID:2333096[20]

ECO:0000304

author statement supported by traceable reference used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0017156

calcium ion regulated exocytosis

PMID:2333096[20]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0016079

synaptic vesicle exocytosis

PMID:2333096[20]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0046872

metal ion binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0479

F

Seeded From UniProt

complete

part_of

GO:0016020

membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0472

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963
UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

part_of

GO:0016021

integral component of membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0812

C

Seeded From UniProt

complete

involved_in

GO:0030154

cell differentiation

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0221

P

Seeded From UniProt

complete

part_of

GO:0030054

cell junction

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0965

C

Seeded From UniProt

complete

part_of

GO:0045202

synapse

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0770

C

Seeded From UniProt

complete

part_of

GO:0031410

cytoplasmic vesicle

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0968

C

Seeded From UniProt

complete

part_of

GO:0042584

chromaffin granule membrane

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0062

C

Seeded From UniProt

complete

part_of

GO:0030672

synaptic vesicle membrane

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0260

C

Seeded From UniProt

complete

part_of

GO:0030658

transport vesicle membrane

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0245

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. Dai, Z et al. (2017) Rab3A Inhibition of Ca -Dependent Dopamine Release From PC12 Cells Involves Interaction With Synaptotagmin I. J. Cell. Biochem. 118 3696-3705 PubMed GONUTS page
  2. Li, H et al. (2013) A Bcl-xL-Drp1 complex regulates synaptic vesicle membrane dynamics during endocytosis. Nat. Cell Biol. 15 773-85 PubMed GONUTS page
  3. 3.0 3.1 3.2 3.3 3.4 3.5 Chapman, ER et al. (1998) Delineation of the oligomerization, AP-2 binding, and synprint binding region of the C2B domain of synaptotagmin. J. Biol. Chem. 273 32966-72 PubMed GONUTS page
  4. 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 Thomas, DM et al. (1999) Functional and biochemical analysis of the C2 domains of synaptotagmin IV. Mol. Biol. Cell 10 2285-95 PubMed GONUTS page
  5. 5.0 5.1 5.2 5.3 Wang, Z & Chapman, ER (2010) Rat and Drosophila synaptotagmin 4 have opposite effects during SNARE-catalyzed membrane fusion. J. Biol. Chem. 285 30759-66 PubMed GONUTS page
  6. 6.0 6.1 6.2 6.3 Tucker, WC et al. (2003) Identification of synaptotagmin effectors via acute inhibition of secretion from cracked PC12 cells. J. Cell Biol. 162 199-209 PubMed GONUTS page
  7. 7.0 7.1 Takamori, S et al. (2006) Molecular anatomy of a trafficking organelle. Cell 127 831-46 PubMed GONUTS page
  8. 8.0 8.1 8.2 8.3 8.4 Shin, OH et al. (2003) Sr2+ binding to the Ca2+ binding site of the synaptotagmin 1 C2B domain triggers fast exocytosis without stimulating SNARE interactions. Neuron 37 99-108 PubMed GONUTS page
  9. Wilhelm, BG et al. (2014) Composition of isolated synaptic boutons reveals the amounts of vesicle trafficking proteins. Science 344 1023-8 PubMed GONUTS page
  10. Davletov, BA & Südhof, TC (1993) A single C2 domain from synaptotagmin I is sufficient for high affinity Ca2+/phospholipid binding. J. Biol. Chem. 268 26386-90 PubMed GONUTS page
  11. Yun, HJ et al. (2013) LRRK2 phosphorylates Snapin and inhibits interaction of Snapin with SNAP-25. Exp. Mol. Med. 45 e36 PubMed GONUTS page
  12. Ko, J et al. (2009) Neuroligin-1 performs neurexin-dependent and neurexin-independent functions in synapse validation. EMBO J. 28 3244-55 PubMed GONUTS page
  13. 13.0 13.1 13.2 Li, C et al. (1995) Ca(2+)-dependent and -independent activities of neural and non-neural synaptotagmins. Nature 375 594-9 PubMed GONUTS page
  14. 14.0 14.1 Bakkaloglu, B et al. (2008) Molecular cytogenetic analysis and resequencing of contactin associated protein-like 2 in autism spectrum disorders. Am. J. Hum. Genet. 82 165-73 PubMed GONUTS page
  15. 15.0 15.1 15.2 15.3 15.4 15.5 Matthew, WD et al. (1981) Identification of a synaptic vesicle-specific membrane protein with a wide distribution in neuronal and neurosecretory tissue. J. Cell Biol. 91 257-69 PubMed GONUTS page
  16. 16.0 16.1 Tokumaru, H et al. (2008) Direct interaction of SNARE complex binding protein synaphin/complexin with calcium sensor synaptotagmin 1. Brain Cell Biol 36 173-89 PubMed GONUTS page
  17. Tocco, G et al. (1996) Two synaptotagmin genes, Syt1 and Syt4, are differentially regulated in adult brain and during postnatal development following kainic acid-induced seizures. Brain Res. Mol. Brain Res. 40 229-39 PubMed GONUTS page
  18. 18.0 18.1 van den Bogaart, G et al. (2012) Phosphatidylinositol 4,5-bisphosphate increases Ca2+ affinity of synaptotagmin-1 by 40-fold. J. Biol. Chem. 287 16447-53 PubMed GONUTS page
  19. 19.0 19.1 19.2 19.3 19.4 Vennekate, W et al. (2012) Cis- and trans-membrane interactions of synaptotagmin-1. Proc. Natl. Acad. Sci. U.S.A. 109 11037-42 PubMed GONUTS page
  20. 20.0 20.1 20.2 20.3 20.4 20.5 20.6 Perin, MS et al. (1990) Phospholipid binding by a synaptic vesicle protein homologous to the regulatory region of protein kinase C. Nature 345 260-3 PubMed GONUTS page
  21. 21.0 21.1 Lai, Y & Shin, YK (2012) The importance of an asymmetric distribution of acidic lipids for synaptotagmin 1 function as a Ca2+ sensor. Biochem. J. 443 223-9 PubMed GONUTS page
  22. 22.0 22.1 22.2 Zhang, Z et al. (2011) Release mode of large and small dense-core vesicles specified by different synaptotagmin isoforms in PC12 cells. Mol. Biol. Cell 22 2324-36 PubMed GONUTS page
  23. Cheng, Y et al. (2004) Crystallographic identification of Ca2+ and Sr2+ coordination sites in synaptotagmin I C2B domain. Protein Sci. 13 2665-72 PubMed GONUTS page
  24. 24.0 24.1 24.2 24.3 Bhalla, A et al. (2008) Analysis of the synaptotagmin family during reconstituted membrane fusion. Uncovering a class of inhibitory isoforms. J. Biol. Chem. 283 21799-807 PubMed GONUTS page
  25. Maienschein, V et al. (1999) A plethora of presynaptic proteins associated with ATP-storing organelles in cultured astrocytes. Glia 26 233-44 PubMed GONUTS page
  26. 26.0 26.1 Fukuda, M et al. (2002) Synaptotagmin IX regulates Ca2+-dependent secretion in PC12 cells. J. Biol. Chem. 277 4601-4 PubMed GONUTS page
  27. Fukuda, M (2004) RNA interference-mediated silencing of synaptotagmin IX, but not synaptotagmin I, inhibits dense-core vesicle exocytosis in PC12 cells. Biochem. J. 380 875-9 PubMed GONUTS page
  28. Zhu, D et al. (2007) Synaptotagmin I and IX function redundantly in controlling fusion pore of large dense core vesicles. Biochem. Biophys. Res. Commun. 361 922-7 PubMed GONUTS page
  29. 29.00 29.01 29.02 29.03 29.04 29.05 29.06 29.07 29.08 29.09 29.10 29.11 29.12 29.13 29.14 29.15 29.16 29.17 29.18 29.19 29.20 29.21 29.22 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
  30. Hayashi, T et al. (2012) Subcellular localization and putative role of VPS13A/chorein in dopaminergic neuronal cells. Biochem. Biophys. Res. Commun. 419 511-6 PubMed GONUTS page
  31. Harada, A et al. (2000) Nadrin, a novel neuron-specific GTPase-activating protein involved in regulated exocytosis. J. Biol. Chem. 275 36885-91 PubMed GONUTS page