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PSEAE:AMPR
Contents
| Species (Taxon ID) | Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG12228). (208964) | |
| Gene Name(s) | ampR | |
| Protein Name(s) | HTH-type transcriptional activator AmpR | |
| External Links | ||
| UniProt | P24734 | |
| EMBL | X67095 AE004091 X54719 | |
| PIR | E83132 S24954 | |
| RefSeq | NP_252798.1 | |
| ProteinModelPortal | P24734 | |
| SMR | P24734 | |
| STRING | 208964.PA4109 | |
| EnsemblBacteria | AAG07496 | |
| GeneID | 877983 | |
| KEGG | pae:PA4109 | |
| PATRIC | 19842898 | |
| PseudoCAP | PA4109 | |
| eggNOG | COG0583 | |
| HOGENOM | HOG000233528 | |
| KO | K17850 | |
| OMA | AQWLTPR | |
| OrthoDB | EOG6G4VSC | |
| PhylomeDB | P24734 | |
| Proteomes | UP000002438 | |
| GO | GO:0005737 GO:0003677 GO:0003700 GO:1900232 GO:0050714 GO:0045862 GO:1900378 GO:0006355 GO:0006351 | |
| Gene3D | 1.10.10.10 | |
| InterPro | IPR005119 IPR000847 IPR011991 | |
| Pfam | PF00126 PF03466 | |
| PRINTS | PR00039 | |
| PROSITE | PS50931 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
NOT |
GO:0030528 |
transcription regulator activity |
ECO:0000314 |
F |
Figure 5 Regulation of heat-shock response by AmpR. |
complete | ||||
|
enables |
GO:0043565 |
sequence-specific DNA binding |
ECO:0006009 |
chromatin immunoprecipitation-seq evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0043565 |
sequence-specific DNA binding |
ECO:0005620 |
chromatin immunoprecipitation-PCR evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0032993 |
protein-DNA complex |
ECO:0006009 |
chromatin immunoprecipitation-seq evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0032993 |
protein-DNA complex |
ECO:0005620 |
chromatin immunoprecipitation-PCR evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0043565 |
sequence-specific DNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG13923 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006351 |
transcription, DNA-templated |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG11795 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG12694 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:1900378 |
positive regulation of secondary metabolite biosynthetic process |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:1900232 |
negative regulation of single-species biofilm formation on inanimate substrate |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0050714 |
positive regulation of protein secretion |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0045862 |
positive regulation of proteolysis |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 1.3 1.4 Balasubramanian, D et al. (2014) Deep sequencing analyses expands the Pseudomonas aeruginosa AmpR regulon to include small RNA-mediated regulation of iron acquisition, heat shock and oxidative stress response. Nucleic Acids Res. 42 979-98 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 3.3 3.4 Balasubramanian, D et al. (2012) The regulatory repertoire of Pseudomonas aeruginosa AmpC ß-lactamase regulator AmpR includes virulence genes. PLoS ONE 7 e34067 PubMed GONUTS page
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