GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

PHOTE:T0PH26

From GONUTS
Jump to: navigation, search
Species (Taxon ID) Photorhabdus temperata subsp. temperata M1021. (1221520)
Gene Name(s) No Information Provided.
Protein Name(s) Transcriptional regulator HdfR (ECO:0000313 with EMBL:EQC02051.1)
External Links
UniProt T0PH26
EMBL AUXQ01000002
EnsemblBacteria EQC02051
GO GO:0003677
GO:0003700
GO:0006351
Gene3D 1.10.10.10
InterPro IPR005119
IPR000847
IPR011991
Pfam PF00126
PF03466
PRINTS PR00039
PROSITE PS50931

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0000988

protein binding transcription factor activity

PMID:22151606[1]

ECO:0000315

F

according to figure 2 the knockout mutant showed defective percent of transmission compared to both the wild type and the knockout mutant with reinserted HdfR

complete
CACAO 9811

enables

GO:0003677

DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR020890

F

Seeded From UniProt

complete

enables

GO:0003700

DNA-binding transcription factor activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000847
InterPro:IPR020890

F

Seeded From UniProt

complete

involved_in

GO:0006355

regulation of transcription, DNA-templated

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000847

P

Seeded From UniProt

complete

involved_in

GO:0045892

negative regulation of transcription, DNA-templated

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR020890

P

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000038

ECO:0000323

imported automatically asserted information used in automatic assertion

UniProtKB-KW:KW-0238

F

Seeded From UniProt

complete

enables

GO:0003700

DNA-binding transcription factor activity

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000101355

F

Seeded From UniProt

complete

involved_in

GO:0045892

negative regulation of transcription, DNA-templated

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000101355

P

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. Easom, CA & Clarke, DJ (2012) HdfR is a regulator in Photorhabdus luminescens that modulates metabolism and symbiosis with the nematode Heterorhabditis. Environ. Microbiol. 14 953-66 PubMed GONUTS page