PARDP:HPBD

Species (Taxon ID)	Paracoccus denitrificans (strain Pd 1222). (318586)
Gene Name(s)	hpbD
Protein Name(s)	4-hydroxyproline betaine 2-epimerase Hyp-B 2-epimerase (4R)-4-hydroxyproline betaine 2-epimerase
External Links
UniProt	A1B198
EMBL	CP000489
RefSeq	WP_011747512.1 YP_914988.1
PDB	4E8G 4IZG 4J1O
PDBsum	4E8G 4IZG 4J1O
ProteinModelPortal	A1B198
SMR	A1B198
STRING	318586.Pden_1187
EnsemblBacteria	ABL69292
GeneID	4580070
KEGG	pde:Pden_1187
PATRIC	22853539
eggNOG	COG4948
HOGENOM	HOG000140215
OMA	RRVDRIN
BioCyc	PDEN318586:GCVQ-1200-MONOMER
Proteomes	UP000000361
GO	GO:0046872 GO:0036361 GO:0006579
Gene3D	3.20.20.120 3.30.390.10
InterPro	IPR029065 IPR029017 IPR013342 IPR013341 IPR001354
PANTHER	PTHR13794
Pfam	PF01188 PF02746
SMART	SM00922
SUPFAM	SSF51604 SSF54826

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Extension	Notes	Status
	GO:0016855	racemase and epimerase activity, acting on amino acids and derivatives	PMID:24056934	ECO:0000314			F		Figure 4-b shows the kinetic parameters for the epimerase activity on two different substrates. The kcat/Km values are only modest. This is because the Km values are high. The authors note in the preceding text that this is acceptable since the cellular concentrations of these compounds are high. This GO term is not specific enough but is the best currently available term.	complete CACAO 10216
enables	GO:0016855	racemase and epimerase activity, acting on amino acids and derivatives	PMID:24056934	ECO:0000314	direct assay evidence used in manual assertion		F		Seeded From UniProt	complete
enables	GO:0036361	racemase activity, acting on amino acids and derivatives	PMID:24056934	ECO:0000314	direct assay evidence used in manual assertion		F		Seeded From UniProt	complete
involved_in	GO:0006579	amino-acid betaine catabolic process	PMID:24056934	ECO:0000315	mutant phenotype evidence used in manual assertion		P		Seeded From UniProt	complete
involved_in	GO:0006579	amino-acid betaine catabolic process	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR034622	P		Seeded From UniProt	complete
enables	GO:0016855	racemase and epimerase activity, acting on amino acids and derivatives	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR034622	F		Seeded From UniProt	complete
enables	GO:0016853	isomerase activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0413	F		Seeded From UniProt	complete
enables	GO:0046872	metal ion binding	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0479	F		Seeded From UniProt	complete
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References

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