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PARDP:4HYPE
Contents
| Species (Taxon ID) | Paracoccus denitrificans (strain Pd 1222). (318586) | |
| Gene Name(s) | hypF | |
| Protein Name(s) | 4-hydroxyproline 2-epimerase (ECO:0000303 with PMID:24056934[1], ECO:0000303 with PMID:24980702[2])
4Hyp 2-epimerase (ECO:0000303 with PMID:24056934[1]) 4HypE (ECO:0000303 with PMID:24980702[2]) | |
| External Links | ||
| UniProt | A1BBM5 | |
| EMBL | CP000491 | |
| RefSeq | WP_011751078.1 | |
| ProteinModelPortal | A1BBM5 | |
| EnsemblBacteria | ABL72919 | |
| KEGG | pde:Pden_4859 | |
| PATRIC | 22860945 | |
| HOGENOM | HOG000084336 | |
| KO | K12658 | |
| OMA | EAYCHES | |
| OrthoDB | EOG6SNDV3 | |
| BioCyc | PDEN318586:GCVQ-4902-MONOMER | |
| Proteomes | UP000000361 | |
| GO | GO:0047580 GO:0006579 | |
| InterPro | IPR008794 | |
| Pfam | PF05544 | |
| PIRSF | PIRSF029792 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0047580 |
4-hydroxyproline epimerase activity |
ECO:0000314 |
F |
Table 2 contains the kinetic parameters for the reaction, the uniprot ID and the assigned function. (4R-hydroxyproline 2-epimerase is 4HypE). Although the kcat/Km value is low, based on genome neighborhood information, the authors conclude this is the function.
|
complete | |||||
|
enables |
GO:0047580 |
4-hydroxyproline epimerase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0047580 |
4-hydroxyproline epimerase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006579 |
amino-acid betaine catabolic process |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0047580 |
4-hydroxyproline epimerase activity |
ECO:0000501 |
evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016853 |
isomerase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 1.3 Zhao, S et al. (2013) Discovery of new enzymes and metabolic pathways by using structure and genome context. Nature 502 698-702 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 Zhao, S et al. (2014) Prediction and characterization of enzymatic activities guided by sequence similarity and genome neighborhood networks. Elife 3 PubMed GONUTS page
