GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
MOUSE:J3QQ16
Contents
| Species (Taxon ID) | Mus musculus (Mouse). (10090) | |
| Gene Name(s) | No Information Provided. | |
| Protein Name(s) | Protein Col6a3 (ECO:0000313 with Ensembl:ENSMUSP00000137585) | |
| External Links | ||
| UniProt | J3QQ16 | |
| EMBL | AC110895 AC158773 FQ976558 | |
| RefSeq | NP_001229938.1 | |
| UniGene | Mm.7562 | |
| ProteinModelPortal | J3QQ16 | |
| SMR | J3QQ16 | |
| PRIDE | J3QQ16 | |
| Ensembl | ENSMUST00000097653 | |
| GeneID | 12835 | |
| KEGG | mmu:12835 | |
| CTD | 1293 | |
| MGI | MGI:88461 | |
| GeneTree | ENSGT00760000119051 | |
| KO | K06238 | |
| OrthoDB | EOG7N0C3R | |
| Reactome | REACT_196606 REACT_198984 REACT_199046 REACT_199055 REACT_216309 REACT_236183 REACT_263353 | |
| NextBio | 35563392 | |
| Proteomes | UP000000589 | |
| ExpressionAtlas | J3QQ16 | |
| GO | GO:0005581 GO:0031012 GO:0005615 GO:0042383 GO:0004867 | |
| Gene3D | 2.60.40.10 3.40.50.410 4.10.410.10 | |
| InterPro | IPR008160 IPR003961 IPR013783 IPR002223 IPR020901 IPR002035 | |
| Pfam | PF01391 PF00014 PF00092 | |
| PRINTS | PR00759 | |
| SMART | SM00060 SM00131 SM00327 | |
| SUPFAM | SSF49265 SSF53300 SSF57362 | |
| PROSITE | PS00280 PS50279 PS50853 PS50234 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
part_of |
GO:0062023 |
collagen-containing extracellular matrix |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
part_of:(UBERON:0000006) |
Seeded From UniProt |
complete | ||
|
enables |
GO:0030020 |
extracellular matrix structural constituent conferring tensile strength |
ECO:0007666 |
automatically integrated combinatorial computational and experimental evidence used in manual assertion |
F |
occurs_in:(UBERON:0000006) |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0062023 |
collagen-containing extracellular matrix |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:109613 |
C |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0031012 |
extracellular matrix |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:106591 |
C |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005615 |
extracellular space |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:2684334 |
C |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0003429 |
growth plate cartilage chondrocyte morphogenesis |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:106591 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0042383 |
sarcolemma |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
|
Seeded From UniProt |
complete | ||
|
part_of |
GO:0031012 |
extracellular matrix |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
part_of:(EMAPA:16039) |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0031012 |
extracellular matrix |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
|
Seeded From UniProt |
complete | ||
|
part_of |
GO:0031012 |
extracellular matrix |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005615 |
extracellular space |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005581 |
collagen trimer |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0010951 |
negative regulation of endopeptidase activity |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0004867 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0031012 |
extracellular matrix |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P12111 |
C |
Seeded From UniProt |
complete | ||
|
enables |
GO:0004867 |
serine-type endopeptidase inhibitor activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Naba, A et al. (2017) Quantitative proteomic profiling of the extracellular matrix of pancreatic islets during the angiogenic switch and insulinoma progression. Sci Rep 7 40495 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ 3.0 3.1 Lechner, BE et al. (2006) Developmental regulation of biglycan expression in muscle and tendon. Muscle Nerve 34 347-55 PubMed GONUTS page
- ↑ Dziadek, M et al. (1996) Deposition of collagen VI in the extracellular matrix during mouse embryogenesis correlates with expression of the alpha 3(VI) subunit gene. Exp. Cell Res. 226 302-15 PubMed GONUTS page
- ↑ Fitzgerald, J et al. (2008) Three novel collagen VI chains, alpha4(VI), alpha5(VI), and alpha6(VI). J. Biol. Chem. 283 20170-80 PubMed GONUTS page
- ↑ Bogan, JS & Lodish, HF (1999) Two compartments for insulin-stimulated exocytosis in 3T3-L1 adipocytes defined by endogenous ACRP30 and GLUT4. J. Cell Biol. 146 609-20 PubMed GONUTS page
- ↑ Pan, TC et al. (2014) A mouse model for dominant collagen VI disorders: heterozygous deletion of Col6a3 Exon 16. J. Biol. Chem. 289 10293-307 PubMed GONUTS page
