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MOUSE:EGFLA
Contents
| Species (Taxon ID) | Mus musculus (Mouse). (10090) | |
| Gene Name(s) | Egflam | |
| Protein Name(s) | Pikachurin
EGF-like, fibronectin type-III and laminin G-like domain-containing protein Nectican | |
| External Links | ||
| UniProt | Q4VBE4 | |
| EMBL | DQ223720 AK031136 AK033332 AK037223 AK041546 AC105969 AC158747 BC051455 BC095994 BC150710 | |
| CCDS | CCDS27370.1 | |
| RefSeq | NP_001276425.1 NP_848863.1 XP_006520053.1 | |
| UniGene | Mm.203208 | |
| ProteinModelPortal | Q4VBE4 | |
| SMR | Q4VBE4 | |
| IntAct | Q4VBE4 | |
| STRING | 10090.ENSMUSP00000094238 | |
| PhosphoSite | Q4VBE4 | |
| MaxQB | Q4VBE4 | |
| PaxDb | Q4VBE4 | |
| PRIDE | Q4VBE4 | |
| Ensembl | ENSMUST00000058593 ENSMUST00000096494 | |
| GeneID | 268780 | |
| KEGG | mmu:268780 | |
| UCSC | uc007vea.1 uc007veb.1 | |
| CTD | 133584 | |
| MGI | MGI:2146149 | |
| eggNOG | NOG238064 | |
| GeneTree | ENSGT00530000063501 | |
| HOGENOM | HOG000112344 | |
| HOVERGEN | HBG107839 | |
| InParanoid | Q4VBE4 | |
| OMA | FMRFKTT | |
| OrthoDB | EOG7BGHJZ | |
| PhylomeDB | Q4VBE4 | |
| TreeFam | TF326548 | |
| NextBio | 392491 | |
| PRO | PR:Q4VBE4 | |
| Proteomes | UP000000589 | |
| Bgee | Q4VBE4 | |
| ExpressionAtlas | Q4VBE4 | |
| Genevestigator | Q4VBE4 | |
| GO | GO:0005604 GO:0030054 GO:0031012 GO:0005614 GO:0045202 GO:0005539 GO:0030198 GO:0019800 GO:0010811 | |
| Gene3D | 2.60.120.200 2.60.40.10 | |
| InterPro | IPR013320 IPR000742 IPR013032 IPR003961 IPR013783 IPR001791 | |
| Pfam | PF00008 PF00041 PF00054 PF02210 | |
| SMART | SM00181 SM00060 SM00282 | |
| SUPFAM | SSF49265 SSF49899 | |
| PROSITE | PS00022 PS01186 PS50026 PS50853 PS50025 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0031012 |
extracellular matrix |
ECO:0000315 |
C |
Figure 2 |
complete | |||||
| GO:0031012 |
extracellular matrix |
ECO:0000314 |
C |
Figure 2B Shows strong evidence via tag mapping of 3′ end initiation was correlated with a short intergenic distance when in tail-to-tail orientation with a neighboring gene suggesting a possible role in an intergenic regulatory interaction. |
complete | |||||
|
part_of |
GO:0031012 |
extracellular matrix |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
acts_upstream_of_or_within |
GO:0030198 |
extracellular matrix organization |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
acts_upstream_of_or_within |
GO:0019800 |
peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
acts_upstream_of_or_within |
GO:0010811 |
positive regulation of cell-substrate adhesion |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0009986 |
cell surface |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005614 |
interstitial matrix |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
part_of:(EMAPA:32730) |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005604 |
basement membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0005539 |
glycosaminoglycan binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0005509 |
calcium ion binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0045202 |
synapse |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005576 |
extracellular region |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0030054 |
cell junction |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Hu, H et al. (2011) Pikachurin interaction with dystroglycan is diminished by defective O-mannosyl glycosylation in congenital muscular dystrophy models and rescued by LARGE overexpression. Neurosci. Lett. 489 10-5 PubMed GONUTS page
- ↑ Carninci, P et al. (2005) The transcriptional landscape of the mammalian genome. Science 309 1559-63 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 Manabe, R et al. (2008) Transcriptome-based systematic identification of extracellular matrix proteins. Proc. Natl. Acad. Sci. U.S.A. 105 12849-54 PubMed GONUTS page
