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MOUSE:CO7A1
Contents
| Species (Taxon ID) | Mus musculus (Mouse). (10090) | |
| Gene Name(s) | Col7a1 (ECO:0000312 with MGI:MGI:88462) | |
| Protein Name(s) | Collagen alpha-1(VII) chain
Long-chain collagen LC collagen | |
| External Links | ||
| UniProt | Q63870 | |
| EMBL | U32107 AC174646 S63654 | |
| CCDS | CCDS40770.1 | |
| PIR | A45748 | |
| RefSeq | NP_031764.2 XP_006511998.1 | |
| UniGene | Mm.6200 | |
| ProteinModelPortal | Q63870 | |
| SMR | Q63870 | |
| IntAct | Q63870 | |
| MINT | MINT-4109970 | |
| MEROPS | I02.967 | |
| PhosphoSite | Q63870 | |
| PaxDb | Q63870 | |
| PRIDE | Q63870 | |
| Ensembl | ENSMUST00000026740 ENSMUST00000112070 | |
| GeneID | 12836 | |
| KEGG | mmu:12836 | |
| UCSC | uc009rrh.1 | |
| CTD | 1294 | |
| MGI | MGI:88462 | |
| eggNOG | NOG12793 | |
| GeneTree | ENSGT00770000120467 | |
| HOGENOM | HOG000111866 | |
| HOVERGEN | HBG051053 | |
| InParanoid | Q63870 | |
| KO | K16628 | |
| OMA | WHSGHGP | |
| OrthoDB | EOG7CG6Z4 | |
| PhylomeDB | Q63870 | |
| TreeFam | TF351645 | |
| Reactome | REACT_196595 REACT_198984 REACT_199046 REACT_199055 REACT_202342 REACT_206066 REACT_216309 | |
| NextBio | 282356 | |
| PRO | PR:Q63870 | |
| Proteomes | UP000000589 | |
| Bgee | Q63870 | |
| CleanEx | MM_COL7A1 | |
| Genevestigator | Q63870 | |
| GO | GO:0005604 GO:0005581 GO:0005576 GO:0005615 GO:0042802 GO:0004867 GO:0007155 | |
| Gene3D | 2.60.40.10 3.40.50.410 4.10.410.10 | |
| InterPro | IPR008160 IPR003961 IPR013783 IPR002223 IPR020901 IPR002035 | |
| Pfam | PF01391 PF00041 PF00014 PF00092 | |
| PRINTS | PR00759 | |
| SMART | SM00060 SM00327 | |
| SUPFAM | SSF49265 SSF53300 SSF57362 | |
| PROSITE | PS00280 PS50279 PS50853 PS50234 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
part_of |
GO:0062023 |
collagen-containing extracellular matrix |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
part_of:(UBERON:0000006) |
Seeded From UniProt |
complete | ||
|
enables |
GO:0030020 |
extracellular matrix structural constituent conferring tensile strength |
ECO:0007666 |
automatically integrated combinatorial computational and experimental evidence used in manual assertion |
F |
occurs_in:(UBERON:0000006) |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0062023 |
collagen-containing extracellular matrix |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
part_of:(UBERON:0002048)|part_of:(UBERON:0001155) |
Seeded From UniProt |
complete | ||
|
enables |
GO:0030020 |
extracellular matrix structural constituent conferring tensile strength |
ECO:0007666 |
automatically integrated combinatorial computational and experimental evidence used in manual assertion |
F |
occurs_in:(UBERON:0002048)|occurs_in:(UBERON:0001155) |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0062023 |
collagen-containing extracellular matrix |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:109613 |
C |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0031012 |
extracellular matrix |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:106591 |
C |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005615 |
extracellular space |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:2684334 |
C |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0003429 |
growth plate cartilage chondrocyte morphogenesis |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:106591 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005604 |
basement membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
part_of:(EMAPA:17525) |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005604 |
basement membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
part_of:(EMAPA:16039) |
Seeded From UniProt |
complete | ||
|
enables |
GO:0042802 |
identical protein binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0010951 |
negative regulation of endopeptidase activity |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0004867 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0010951 |
negative regulation of endopeptidase activity |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0004867 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0004867 |
serine-type endopeptidase inhibitor activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005576 |
extracellular region |
Reactome:R-NUL-4084497 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
C |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005576 |
extracellular region |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005581 |
collagen trimer |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0007155 |
cell adhesion |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0004867 |
serine-type endopeptidase inhibitor activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005604 |
basement membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0010466 |
negative regulation of peptidase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0030414 |
peptidase inhibitor activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Naba, A et al. (2017) Quantitative proteomic profiling of the extracellular matrix of pancreatic islets during the angiogenic switch and insulinoma progression. Sci Rep 7 40495 PubMed GONUTS page
- ↑ 2.0 2.1 Naba, A et al. (2012) The matrisome: in silico definition and in vivo characterization by proteomics of normal and tumor extracellular matrices. Mol. Cell Proteomics 11 M111.014647 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 3.3 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Gebauer, JM et al. (2009) Mouse AMACO, a kidney and skin basement membrane associated molecule that mediates RGD-dependent cell attachment. Matrix Biol. 28 456-62 PubMed GONUTS page
- ↑ Manabe, R et al. (2008) Transcriptome-based systematic identification of extracellular matrix proteins. Proc. Natl. Acad. Sci. U.S.A. 105 12849-54 PubMed GONUTS page
- ↑ Leineweber, S et al. (2011) Insight into interactions of the von-Willebrand-factor-A-like domain 2 with the FNIII-like domain 9 of collagen VII by NMR and SPR. FEBS Lett. 585 1748-52 PubMed GONUTS page
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