GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
MAIZE:CRS2
Contents
Species (Taxon ID) | Zea mays (Maize). (4577) | |
Gene Name(s) | CRS2 | |
Protein Name(s) | Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic
Chloroplastic RNA splicing factor 2 Protein CHLOROPLAST RNA SPLICING 2 | |
External Links | ||
UniProt | Q9M5P4 | |
EMBL | AF225708 | |
RefSeq | NP_001104963.1 | |
UniGene | Zm.478 | |
PDB | 1RYB 1RYM 1RYN | |
PDBsum | 1RYB 1RYM 1RYN | |
ProteinModelPortal | Q9M5P4 | |
SMR | Q9M5P4 | |
GeneID | 541812 | |
KEGG | zma:541812 | |
Gramene | Q9M5P4 | |
MaizeGDB | 106358 | |
HOGENOM | HOG000004797 | |
KO | K01056 | |
EvolutionaryTrace | Q9M5P4 | |
Proteomes | UP000007305 | |
GO | GO:0009570 GO:0030529 GO:0004045 GO:0006397 GO:0008380 | |
Gene3D | 3.40.50.1470 | |
HAMAP | MF_00083 | |
InterPro | IPR001328 IPR018171 | |
PANTHER | PTHR17224 | |
Pfam | PF01195 | |
SUPFAM | SSF53178 | |
TIGRFAMs | TIGR00447 | |
PROSITE | PS01195 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
GO:0009570 |
chloroplast stroma |
ECO:0000314 |
C |
Figure 3c: Immunoblots of chloroplast subfractions showed that CRS2 is found predominantly in the chloroplast stroma. |
complete | |||||
GO:0030529 |
ribonucleoprotein complex |
ECO:0000314 |
C |
Figure 6 a,c,d: Following sucrose gradient sedimentation of crude stroma, essentially all of the CRS2 was found in a peak that sediments more rapidly than Rubisco (550 kDa) and more slowly than ribosomes (Figure 6A, C and D). A260 profile of the +MNase gradient illustrating that ribosomes peak in fractions 18–21 (6D) |
complete | |||||
enables |
GO:0004045 |
aminoacyl-tRNA hydrolase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10785 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0004045 |
aminoacyl-tRNA hydrolase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0008380 |
RNA splicing |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006397 |
mRNA processing |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0009536 |
plastid |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0009507 |
chloroplast |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0009570 |
chloroplast stroma |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Jenkins, BD & Barkan, A (2001) Recruitment of a peptidyl-tRNA hydrolase as a facilitator of group II intron splicing in chloroplasts. EMBO J. 20 872-9 PubMed GONUTS page
- ↑ Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page