GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

LACLM:XERS

From GONUTS
Jump to: navigation, search
Species (Taxon ID) Lactococcus lactis subsp. cremoris (strain MG1363). (416870)
Gene Name(s) xerS (ECO:0000255 with HAMAP-Rule:MF_01816)
Protein Name(s) Tyrosine recombinase XerS (ECO:0000255 with HAMAP-Rule:MF_01816)
External Links
UniProt A2RKP9
EMBL AM406671
RefSeq YP_001032577.1
ProteinModelPortal A2RKP9
STRING 416870.llmg_1270
EnsemblBacteria CAL97863
GeneID 4798583
KEGG llm:llmg_1270
PATRIC 22283709
eggNOG COG0582
HOGENOM HOG000156525
OMA LRNYDDM
OrthoDB EOG6K13TC
BioCyc LLAC416870:GCDT-1296-MONOMER
Proteomes UP000000364
GO GO:0005737
GO:0003677
GO:0009037
GO:0007049
GO:0051301
GO:0007059
GO:0006313
Gene3D 1.10.150.130
1.10.443.10
HAMAP MF_01816
InterPro IPR011010
IPR013762
IPR002104
IPR023109
IPR004107
IPR023670
Pfam PF13495
PF00589
SUPFAM SSF56349

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0009037

tyrosine-based site-specific recombinase activity

PMID:17630835[1]

ECO:0000315

F

IMP was conclude based on Figure 3, which indicates XerS/difSL Recombination in E. coli. In absence of the lactococcal XerS recombinase, almost no recombination was observed indicating that XerCD of E. coli do not recombine difSL. In contrast, introduction of a plasmid expressing the lactococcal xerS gene increased the excision frequency (observed in E. coli when using the native XerCD/dif system.)

complete
CACAO 4166

enables

GO:0009037

tyrosine-based site-specific recombinase activity

PMID:17630835[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR002104
InterPro:IPR004107
InterPro:IPR011010
InterPro:IPR013762

F

Seeded From UniProt

complete

involved_in

GO:0006310

DNA recombination

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR002104
InterPro:IPR013762
InterPro:IPR023670

P

Seeded From UniProt

complete

involved_in

GO:0007059

chromosome segregation

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR023670

P

Seeded From UniProt

complete

involved_in

GO:0015074

DNA integration

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR002104
InterPro:IPR004107
InterPro:IPR013762
InterPro:IPR023670

P

Seeded From UniProt

complete

involved_in

GO:0051301

cell division

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR023670

P

Seeded From UniProt

complete

involved_in

GO:0007059

chromosome segregation

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000085064

P

Seeded From UniProt

complete

enables

GO:0009037

tyrosine-based site-specific recombinase activity

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000085064

F

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000085064

C

Seeded From UniProt

complete

involved_in

GO:0006310

DNA recombination

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000085064

P

Seeded From UniProt

complete

involved_in

GO:0006310

DNA recombination

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0233

P

Seeded From UniProt

complete

involved_in

GO:0051301

cell division

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0132

P

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0238

F

Seeded From UniProt

complete

involved_in

GO:0007049

cell cycle

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0131

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963
UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

involved_in

GO:0015074

DNA integration

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0229

P

Seeded From UniProt

complete

involved_in

GO:0007059

chromosome segregation

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0159

P

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 Le Bourgeois, P et al. (2007) The unconventional Xer recombination machinery of Streptococci/Lactococci. PLoS Genet. 3 e117 PubMed GONUTS page