GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

HUMAN:LAMC1

From GONUTS
Jump to: navigation, search
Species (Taxon ID) Homo sapiens (Human). (9606)
Gene Name(s) LAMC1 (synonyms: LAMB2)
Protein Name(s) Laminin subunit gamma-1

Laminin B2 chain Laminin-1 subunit gamma Laminin-10 subunit gamma Laminin-11 subunit gamma Laminin-2 subunit gamma Laminin-3 subunit gamma Laminin-4 subunit gamma Laminin-6 subunit gamma Laminin-7 subunit gamma Laminin-8 subunit gamma Laminin-9 subunit gamma S-laminin subunit gamma S-LAM gamma

External Links
UniProt P11047
EMBL J03202
M55210
M55217
M55201
M55211
M55212
M55213
M55214
M55215
M55216
M55192
M55193
M55194
M55195
M55196
M55197
M55198
M55199
M55200
M55202
M55203
M55204
M55205
M55206
M55207
M55208
M55209
AL354953
AL450304
AL450304
AL354953
X13939
M27654
CCDS CCDS1351.1
PIR S13548
RefSeq NP_002284.3
UniGene Hs.609663
ProteinModelPortal P11047
SMR P11047
BioGrid 110109
IntAct P11047
MINT MINT-1184520
STRING 9606.ENSP00000258341
ChEMBL CHEMBL2364187
PhosphoSite P11047
DMDM 224471885
MaxQB P11047
PaxDb P11047
PRIDE P11047
Ensembl ENST00000258341
GeneID 3915
KEGG hsa:3915
UCSC uc001gpy.4
CTD 3915
GeneCards GC01P182992
H-InvDB HIX0001405
HGNC HGNC:6492
HPA CAB004486
HPA001908
HPA001909
MIM 150290
neXtProt NX_P11047
PharmGKB PA30280
eggNOG NOG235720
GeneTree ENSGT00760000118860
HOGENOM HOG000019301
HOVERGEN HBG100808
InParanoid P11047
KO K05635
OMA ATDYPWR
OrthoDB EOG7SR4KJ
PhylomeDB P11047
TreeFam TF352481
Reactome REACT_118572
REACT_163874
REACT_163906
REACT_169262
REACT_22205
ChiTaRS LAMC1
GeneWiki Laminin,_gamma_1
GenomeRNAi 3915
NextBio 15381
PRO PR:P11047
Proteomes UP000005640
Bgee P11047
CleanEx HS_LAMB2
HS_LAMC1
ExpressionAtlas P11047
Genevestigator P11047
GO GO:0005604
GO:0031012
GO:0005576
GO:0005615
GO:0070062
GO:0005606
GO:0043259
GO:0043260
GO:0005201
GO:0043208
GO:0007411
GO:0007155
GO:0016477
GO:0007492
GO:0022617
GO:0030198
GO:0031581
GO:0050679
GO:0006461
GO:0034446
Gene3D 2.60.120.260
InterPro IPR013032
IPR002049
IPR008979
IPR018031
IPR000034
IPR008211
Pfam PF00052
PF00053
PF00055
SMART SM00180
SM00281
SM00136
PROSITE PS00022
PS01186
PS01248
PS50027
PS51115
PS51117

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

enables

GO:0005201

extracellular matrix structural constituent

PMID:25037231[1]

ECO:0007666

automatically integrated combinatorial computational and experimental evidence used in manual assertion

F

occurs_in:(UBERON:0001155)

Seeded From UniProt

complete

enables

GO:0005201

extracellular matrix structural constituent

PMID:27068509[2]

ECO:0007666

automatically integrated combinatorial computational and experimental evidence used in manual assertion

F

occurs_in:(UBERON:0007318)

Seeded From UniProt

complete

enables

GO:0005201

extracellular matrix structural constituent

PMID:27559042[3]

ECO:0007666

automatically integrated combinatorial computational and experimental evidence used in manual assertion

F

  • occurs_in:(UBERON:0006618)
  • occurs_in:(UBERON:0002302)

Seeded From UniProt

complete

enables

GO:0005201

extracellular matrix structural constituent

PMID:20551380[4]

ECO:0007666

automatically integrated combinatorial computational and experimental evidence used in manual assertion

F

occurs_in:(UBERON:0001496)

Seeded From UniProt

complete

enables

GO:0005201

extracellular matrix structural constituent

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q95J98

F

occurs_in:(UBERON:0002084)

Seeded From UniProt

complete

part_of

GO:0062023

collagen-containing extracellular matrix

PMID:28675934[5]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

part_of:(UBERON:0003688)|part_of:(UBERON:0001911)

Seeded From UniProt

complete

enables

GO:0005201

extracellular matrix structural constituent

PMID:28675934[5]

ECO:0007666

automatically integrated combinatorial computational and experimental evidence used in manual assertion

F

occurs_in:(UBERON:0003688)|occurs_in:(UBERON:0001911)

Seeded From UniProt

complete

part_of

GO:0062023

collagen-containing extracellular matrix

PMID:25037231[1]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

part_of:(UBERON:0002107)

Seeded From UniProt

complete

part_of

GO:0062023

collagen-containing extracellular matrix

PMID:25037231[1]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

part_of:(UBERON:0001155)

Seeded From UniProt

complete

enables

GO:0030023

extracellular matrix constituent conferring elasticity

PMID:25037231[1]

ECO:0007666

automatically integrated combinatorial computational and experimental evidence used in manual assertion

F

occurs_in:(UBERON:0002107)

Seeded From UniProt

complete

part_of

GO:0062023

collagen-containing extracellular matrix

PMID:27068509[2]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

part_of:(UBERON:0007318)

Seeded From UniProt

complete

part_of

GO:0062023

collagen-containing extracellular matrix

PMID:27559042[3]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

  • part_of:(UBERON:0006618)
  • part_of:(UBERON:0002302)

Seeded From UniProt

complete

part_of

GO:0062023

collagen-containing extracellular matrix

PMID:23658023[6]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

part_of:(CL:0000057)|part_of:(CL:0002322)

Seeded From UniProt

complete

part_of

GO:0070062

extracellular exosome

PMID:23533145[7]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005604

basement membrane

PMID:22952693[8]

ECO:0000314

direct assay evidence used in manual assertion

C

part_of:(UBERON:0001003)

Seeded From UniProt

complete

part_of

GO:0070062

extracellular exosome

PMID:19199708[9]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

part_of:(UBERON:0001831)

Seeded From UniProt

complete

part_of

GO:0070062

extracellular exosome

PMID:19056867[10]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

part_of:(UBERON:0001088)

Seeded From UniProt

complete

involved_in

GO:0034446

substrate adhesion-dependent cell spreading

PMID:16236823[11]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

colocalizes_with

GO:0062023

collagen-containing extracellular matrix

PMID:20551380[4]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

part_of:(UBERON:0001496)

Seeded From UniProt

complete

colocalizes_with

GO:0062023

collagen-containing extracellular matrix

PMID:22261194[12]

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q95J98

C

part_of:(UBERON:0002084)

Seeded From UniProt

complete

involved_in

GO:0031581

hemidesmosome assembly

PMID:15159456[13]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0022617

extracellular matrix disassembly

PMID:15159456[13]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0016477

cell migration

PMID:15561105[14]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0007155

cell adhesion

PMID:15159456[13]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0065003

protein-containing complex assembly

PMID:15159456[13]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005604

basement membrane

PMID:15159456[13]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0005201

extracellular matrix structural constituent

PMID:15159456[13]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0070062

extracellular exosome

PMID:21362503[15]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

part_of:(CL:0002367)

Seeded From UniProt

complete

part_of

GO:0005615

extracellular space

PMID:10964500[16]

ECO:0000303

author statement without traceable support used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005606

laminin-1 complex

PMID:10964500[16]

ECO:0000303

author statement without traceable support used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005604

basement membrane

PMID:14557481[17]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0062023

collagen-containing extracellular matrix

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:F1MAA7
ensembl:ENSRNOP00000003605

C

Seeded From UniProt

complete

part_of

GO:0031012

extracellular matrix

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:F1MAA7
ensembl:ENSRNOP00000003605

C

Seeded From UniProt

complete

part_of

GO:0005606

laminin-1 complex

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:F1MAA7
ensembl:ENSRNOP00000003605

C

Seeded From UniProt

complete

involved_in

GO:0007492

endoderm development

PMID:9885251[18]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005604

basement membrane

PMID:9885251[18]

ECO:0000304

author statement supported by traceable reference used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0043260

laminin-11 complex

PMID:16236823[11]

ECO:0000304

author statement supported by traceable reference used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0043259

laminin-10 complex

PMID:16236823[11]

ECO:0000304

author statement supported by traceable reference used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0050679

positive regulation of epithelial cell proliferation

PMID:14557481[17]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005606

laminin-1 complex

PMID:14557481[17]

ECO:0000304

author statement supported by traceable reference used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0044267

cellular protein metabolic process

Reactome:R-HSA-392499

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0043687

post-translational protein modification

Reactome:R-HSA-597592

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0030198

extracellular matrix organization

Reactome:R-HSA-1474244

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005788

endoplasmic reticulum lumen

Reactome:R-HSA-8952289

ECO:0000304

author statement supported by traceable reference used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005576

extracellular region

Reactome:R-HSA-4084507
Reactome:R-HSA-4084505
Reactome:R-HSA-3907292
Reactome:R-HSA-2426450
Reactome:R-HSA-216058
Reactome:R-HSA-216048

ECO:0000304

author statement supported by traceable reference used in manual assertion






C

Seeded From UniProt

complete

part_of

GO:0005604

basement membrane

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0084
UniProtKB-SubCell:SL-0025

C

Seeded From UniProt

complete

part_of

GO:0005576

extracellular region

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0964

C

Seeded From UniProt

complete

involved_in

GO:0007155

cell adhesion

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0130

P

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 1.2 1.3 Naba, A et al. (2014) Extracellular matrix signatures of human primary metastatic colon cancers and their metastases to liver. BMC Cancer 14 518 PubMed GONUTS page
  2. 2.0 2.1 Barallobre-Barreiro, J et al. (2016) Extracellular matrix remodelling in response to venous hypertension: proteomics of human varicose veins. Cardiovasc. Res. 110 419-30 PubMed GONUTS page
  3. 3.0 3.1 Barallobre-Barreiro, J et al. (2016) Glycoproteomics Reveals Decorin Peptides With Anti-Myostatin Activity in Human Atrial Fibrillation. Circulation 134 817-32 PubMed GONUTS page
  4. 4.0 4.1 Didangelos, A et al. (2010) Proteomics characterization of extracellular space components in the human aorta. Mol. Cell Proteomics 9 2048-62 PubMed GONUTS page
  5. 5.0 5.1 Naba, A et al. (2017) Characterization of the Extracellular Matrix of Normal and Diseased Tissues Using Proteomics. J. Proteome Res. 16 3083-3091 PubMed GONUTS page
  6. Soteriou, D et al. (2013) Comparative proteomic analysis of supportive and unsupportive extracellular matrix substrates for human embryonic stem cell maintenance. J. Biol. Chem. 288 18716-31 PubMed GONUTS page
  7. Principe, S et al. (2013) In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine. Proteomics 13 1667-71 PubMed GONUTS page
  8. Sage, J et al. (2012) Cleavage of nidogen-1 by cathepsin S impairs its binding to basement membrane partners. PLoS ONE 7 e43494 PubMed GONUTS page
  9. Gonzalez-Begne, M et al. (2009) Proteomic analysis of human parotid gland exosomes by multidimensional protein identification technology (MudPIT). J. Proteome Res. 8 1304-14 PubMed GONUTS page
  10. Gonzales, PA et al. (2009) Large-scale proteomics and phosphoproteomics of urinary exosomes. J. Am. Soc. Nephrol. 20 363-79 PubMed GONUTS page
  11. 11.0 11.1 11.2 Vainionpää, N et al. (2006) Laminin-10 and Lutheran blood group glycoproteins in adhesion of human endothelial cells. Am. J. Physiol., Cell Physiol. 290 C764-75 PubMed GONUTS page
  12. Barallobre-Barreiro, J et al. (2012) Proteomics analysis of cardiac extracellular matrix remodeling in a porcine model of ischemia/reperfusion injury. Circulation 125 789-802 PubMed GONUTS page
  13. 13.0 13.1 13.2 13.3 13.4 13.5 Breitkreutz, D et al. (2004) Inhibition of basement membrane formation by a nidogen-binding laminin gamma1-chain fragment in human skin-organotypic cocultures. J. Cell. Sci. 117 2611-22 PubMed GONUTS page
  14. Ishibashi, M et al. (2005) The cyclooxygenase inhibitor indomethacin modulates gene expression and represses the extracellular matrix protein laminin gamma1 in human glioblastoma cells. Exp. Cell Res. 302 244-52 PubMed GONUTS page
  15. Stamer, WD et al. (2011) Protein profile of exosomes from trabecular meshwork cells. J Proteomics 74 796-804 PubMed GONUTS page
  16. 16.0 16.1 Champliaud, MF et al. (2000) Posttranslational modifications and beta/gamma chain associations of human laminin alpha1 and laminin alpha5 chains: purification of laminin-3 from placenta. Exp. Cell Res. 259 326-35 PubMed GONUTS page
  17. 17.0 17.1 17.2 Virtanen, I et al. (2003) Laminin isoforms in fetal and adult human adrenal cortex. J. Clin. Endocrinol. Metab. 88 4960-6 PubMed GONUTS page
  18. 18.0 18.1 Smyth, N et al. (1999) Absence of basement membranes after targeting the LAMC1 gene results in embryonic lethality due to failure of endoderm differentiation. J. Cell Biol. 144 151-60 PubMed GONUTS page