GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

HUMAN:A8KAQ8

From GONUTS
Jump to: navigation, search
Species (Taxon ID) Homo sapiens (Human). (9606)
Gene Name(s) HERC2 (ECO:0000313 with EMBL:AAI48319.1)
Protein Name(s) HERC2 protein (ECO:0000313 with EMBL:AAI48319.1)
External Links
UniProt A8KAQ8
EMBL BC148318
RefSeq NP_004658.3
UniGene Hs.434890
Hs.610412
Hs.741019
PRIDE A8KAQ8
GeneID 8924
KEGG hsa:8924
CTD 8924
KO K10595
ChiTaRS HERC2
GenomeRNAi 8924
NextBio 33552
GO GO:0008270
Gene3D 2.130.10.30
2.30.30.30
2.60.120.260
InterPro IPR004939
IPR021097
IPR008979
IPR009091
IPR000408
IPR014722
IPR000433
Pfam PF03256
PF11515
PF00415
PF00569
PRINTS PR00633
SMART SM00291
SUPFAM SSF49785
SSF50985
PROSITE PS51284
PS00626
PS50012
PS01357
PS50135

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0010628

positive regulation of gene expression

PMID:22234890[1]

ECO:0000314

P

The over-expression of transcription factor HLTF led to an elevated expression of OCA2, which leads to a darker pigmentation (Figure 4B), when bound to the HERC2 region. This is an IDA because the levels of HLTF correlated to a darker pigmentation when bound to HERC2. Therefore, HERC2 positively regulates the expression of the gene for dark pigment.

complete
CACAO 9949

GO:0046158

ocellus pigment metabolic process

PMID:22234890[1]

ECO:0000314

P

The over-expression of the transcription factor MITF in HEMn-LP cells (cells with the C-allele, which have lighter pigmentation)led to increased OCA2 expression, which darkened the pigmentation of the eye (Figure 4-E).

complete
CACAO 9952

enables

GO:0008270

zinc ion binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000433

F

Seeded From UniProt

complete

enables

GO:0046872

metal ion binding

GO_REF:0000038

ECO:0000323

imported automatically asserted information used in automatic assertion

UniProtKB-KW:KW-0479

F

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 Visser, M et al. (2012) HERC2 rs12913832 modulates human pigmentation by attenuating chromatin-loop formation between a long-range enhancer and the OCA2 promoter. Genome Res. 22 446-55 PubMed GONUTS page