GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

HELPY:RPOBC

From GONUTS
Jump to: navigation, search
Species (Taxon ID) Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacterpylori). (85962)
Gene Name(s) rpoBC
Protein Name(s) Bifunctional DNA-directed RNA polymerase subunit beta-beta'

DNA-directed RNA polymerase subunit beta RNA polymerase subunit beta Transcriptase subunit beta DNA-directed RNA polymerase subunit beta' RNA polymerase subunit beta' Transcriptase subunit beta'

External Links
UniProt O25806
EMBL AE000511
AF068776
AF068254
AF068774
AF068775
PIR F64669
RefSeq NP_207989.1
WP_000037869.1
YP_006935117.1
ProteinModelPortal O25806
SMR O25806
DIP DIP-3257N
IntAct O25806
MINT MINT-159961
STRING 85962.HP1198
PhosSite P11041038
PRIDE O25806
EnsemblBacteria AAD08242
GeneID 13870397
899960
KEGG heo:C694_06195
hpy:HP1198
PATRIC 20593753
eggNOG COG0086
KO K13797
OMA QSIQAFH
OrthoDB EOG6M9DS6
BioCyc HPY:HP1198-MONOMER
Proteomes UP000000429
GO GO:0003677
GO:0003899
GO:0006351
Gene3D 2.30.150.10
2.40.270.10
2.40.50.150
3.90.1110.10
HAMAP MF_01321
MF_01322
InterPro IPR010243
IPR019462
IPR007120
IPR012754
IPR000722
IPR007121
IPR007644
IPR006592
IPR007080
IPR007066
IPR007083
IPR007081
IPR007642
IPR007645
IPR007641
IPR014724
Pfam PF04997
PF00623
PF04983
PF05000
PF04998
PF04563
PF04561
PF04565
PF10385
PF00562
PF04560
SMART SM00663
TIGRFAMs TIGR02013
TIGR02386
PROSITE PS01166

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

contributes_to

GO:0003899

DNA-directed 5'-3' RNA polymerase activity

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0003277
PANTHER:PTN000453461
RGD:620824

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000722
InterPro:IPR006592
InterPro:IPR007066
InterPro:IPR007080
InterPro:IPR007081
InterPro:IPR007083
InterPro:IPR007120
InterPro:IPR007121
InterPro:IPR007641
InterPro:IPR007642
InterPro:IPR007644
InterPro:IPR007645
InterPro:IPR010243
InterPro:IPR012754
InterPro:IPR037033
InterPro:IPR037034

F

Seeded From UniProt

complete

enables

GO:0003899

DNA-directed 5'-3' RNA polymerase activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000722
InterPro:IPR006592
InterPro:IPR007066
InterPro:IPR007080
InterPro:IPR007081
InterPro:IPR007083
InterPro:IPR007120
InterPro:IPR007121
InterPro:IPR007641
InterPro:IPR007642
InterPro:IPR007644
InterPro:IPR007645
InterPro:IPR010243
InterPro:IPR012754
InterPro:IPR014724
InterPro:IPR015712
InterPro:IPR019462
InterPro:IPR037033
InterPro:IPR037034

F

Seeded From UniProt

complete

involved_in

GO:0006351

transcription, DNA-templated

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000722
InterPro:IPR006592
InterPro:IPR007066
InterPro:IPR007080
InterPro:IPR007081
InterPro:IPR007083
InterPro:IPR007120
InterPro:IPR007121
InterPro:IPR007641
InterPro:IPR007642
InterPro:IPR007644
InterPro:IPR007645
InterPro:IPR010243
InterPro:IPR012754
InterPro:IPR015712
InterPro:IPR019462
InterPro:IPR037033
InterPro:IPR037034

P

Seeded From UniProt

complete

enables

GO:0032549

ribonucleoside binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR015712

F

Seeded From UniProt

complete

enables

GO:0003899

DNA-directed 5'-3' RNA polymerase activity

GO_REF:0000003

ECO:0000501

evidence used in automatic assertion

EC:2.7.7.6

F

Seeded From UniProt

complete

involved_in

GO:0006351

transcription, DNA-templated

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000101771

P

Seeded From UniProt

complete

enables

GO:0003899

DNA-directed 5'-3' RNA polymerase activity

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000101771

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000101771

F

Seeded From UniProt

complete

enables

GO:0016740

transferase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0808

F

Seeded From UniProt

complete

enables

GO:0003824

catalytic activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0511

F

Seeded From UniProt

complete

enables

GO:0016779

nucleotidyltransferase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0548

F

Seeded From UniProt

complete

involved_in

GO:0008152

metabolic process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0511

P

Seeded From UniProt

complete

enables

GO:0003899

DNA-directed 5'-3' RNA polymerase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0240

F

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page