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ECOLI:YPDB

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Species (Taxon ID) Escherichia coli (strain K12). (83333)
Gene Name(s) ypdB
Protein Name(s) Transcriptional regulatory protein YpdB
External Links
UniProt P0AE39
EMBL U00096
AP009048
PIR B65012
RefSeq NP_416882.1
YP_490623.1
ProteinModelPortal P0AE39
SMR P0AE39
DIP DIP-48228N
IntAct P0AE39
STRING 511145.b2381
PaxDb P0AE39
PRIDE P0AE39
EnsemblBacteria AAC75440
BAA16251
GeneID 12931566
947395
KEGG ecj:Y75_p2348
eco:b2381
PATRIC 32120141
EchoBASE EB3901
EcoGene EG14149
eggNOG COG3279
HOGENOM HOG000242207
InParanoid P0AE39
KO K02477
OMA EFVMSMN
OrthoDB EOG64R63J
PhylomeDB P0AE39
BioCyc EcoCyc:G7244-MONOMER
ECOL316407:JW2378-MONOMER
PRO PR:P0AE39
Proteomes UP000000318
UP000000625
Genevestigator P0AE39
GO GO:0005737
GO:0003677
GO:0048870
GO:0000160
GO:1900192
GO:0006355
GO:0046677
GO:0006351
InterPro IPR011006
IPR007492
IPR001789
Pfam PF04397
PF00072
SMART SM00850
SM00448
SUPFAM SSF52172
PROSITE PS50930
PS50110

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

involved_in

GO:0006355

regulation of transcription, DNA-templated

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

EcoGene:EG12006
EcoGene:EG14149
PANTHER:PTN002459292
UniProtKB:P26275

P

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

PMID:21873635[1]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

EcoGene:EG14149
PANTHER:PTN002459292

F

Seeded From UniProt

complete

involved_in

GO:0006355

regulation of transcription, DNA-templated

PMID:23222720[2]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

PMID:23222720[2]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0000160

phosphorelay signal transduction system

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001789

P

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR007492

F

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963
UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

involved_in

GO:0000160

phosphorelay signal transduction system

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0902

P

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0238

F

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
  2. 2.0 2.1 Fried, L et al. (2013) Identification of a target gene and activating stimulus for the YpdA/YpdB histidine kinase/response regulator system in Escherichia coli. J. Bacteriol. 195 807-15 PubMed GONUTS page