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ECOLI:XYLA
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | xylA | |
| Protein Name(s) | Xylose isomerase
D-xylulose keto-isomerase | |
| External Links | ||
| UniProt | P00944 | |
| EMBL | K01996 X04691 X00772 X00772 S68257 U00039 U00096 AP009048 | |
| PIR | A30252 | |
| RefSeq | NP_418022.1 YP_491869.1 | |
| ProteinModelPortal | P00944 | |
| SMR | P00944 | |
| DIP | DIP-11149N | |
| IntAct | P00944 | |
| MINT | MINT-1238504 | |
| STRING | 511145.b3565 | |
| PRIDE | P00944 | |
| EnsemblBacteria | AAC76589 BAE77728 | |
| GeneID | 12933546 948141 | |
| KEGG | ecj:Y75_p3610 eco:b3565 | |
| PATRIC | 32122606 | |
| EchoBASE | EB1067 | |
| EcoGene | EG11074 | |
| eggNOG | COG2115 | |
| HOGENOM | HOG000252293 | |
| InParanoid | P00944 | |
| KO | K01805 | |
| OMA | HTFQHEL | |
| OrthoDB | EOG62NX4R | |
| PhylomeDB | P00944 | |
| BioCyc | EcoCyc:XYLISOM-MONOMER ECOL316407:JW3537-MONOMER MetaCyc:XYLISOM-MONOMER | |
| PRO | PR:P00944 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P00944 | |
| GO | GO:0005737 GO:0000287 GO:0009045 GO:0042843 GO:0006098 | |
| Gene3D | 3.20.20.150 | |
| HAMAP | MF_00455 | |
| InterPro | IPR013022 IPR013452 IPR001998 | |
| Pfam | PF01261 | |
| PRINTS | PR00688 | |
| SUPFAM | SSF51658 | |
| TIGRFAMs | TIGR02630 | |
| PROSITE | PS51415 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0009045 |
xylose isomerase activity |
ECO:0000315 |
F |
Table 1 shows D-xylose isomerase activity in both mutant and WT strains of E. coli. |
complete | |||||
|
enables |
GO:0009045 |
xylose isomerase activity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0042843 |
D-xylose catabolic process |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG11074 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0009045 |
xylose isomerase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG11074 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0042843 |
D-xylose catabolic process |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0009045 |
xylose isomerase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0005975 |
carbohydrate metabolic process |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0009045 |
xylose isomerase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0009045 |
xylose isomerase activity |
ECO:0000501 |
evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0000287 |
magnesium ion binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000089075 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0009045 |
xylose isomerase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000089075 |
F |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000089075 |
C |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0042732 |
D-xylose metabolic process |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000089075 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0005975 |
carbohydrate metabolic process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0046872 |
metal ion binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016853 |
isomerase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0042732 |
D-xylose metabolic process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Wovcha, MG et al. (1983) Amplification of D-xylose and D-glucose isomerase activities in Escherichia coli by gene cloning. Appl. Environ. Microbiol. 45 1402-4 PubMed GONUTS page
- ↑ 2.0 2.1 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Briggs, KA et al. (1984) Molecular cloning, DNA structure and expression of the Escherichia coli D-xylose isomerase. EMBO J. 3 611-6 PubMed GONUTS page
- ↑ Batt, CA et al. (1990) Identification of essential histidine residues in the active site of Escherichia coli xylose (glucose) isomerase. Proc. Natl. Acad. Sci. U.S.A. 87 618-22 PubMed GONUTS page
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