ECOLI:XNI

Species (Taxon ID)	Escherichia coli (strain K12). (83333)
Gene Name(s)	ygdG (synonyms: exo, xni)
Protein Name(s)	Flap endonuclease Xni FEN Exonuclease IX ExoIX
External Links
UniProt	P38506
EMBL	L07763 U29581 U00096 AP009048 M27177
PIR	B65062
RefSeq	NP_417278.4 YP_491006.1
PDB	3ZD8 3ZD9 3ZDA 3ZDB 3ZDC 3ZDD 3ZDE
PDBsum	3ZD8 3ZD9 3ZDA 3ZDB 3ZDC 3ZDD 3ZDE
ProteinModelPortal	P38506
SMR	P38506
DIP	DIP-11145N
IntAct	P38506
STRING	511145.b2798
PaxDb	P38506
EnsemblBacteria	AAC75840 BAE76870
GeneID	12930228 947256
KEGG	ecj:Y75_p2735 eco:b2798
PATRIC	32121012
EchoBASE	EB2275
EcoGene	EG12372
eggNOG	COG0258
HOGENOM	HOG000040580
InParanoid	P38506
KO	K01146
OrthoDB	EOG6SJJH7
PhylomeDB	P38506
BioCyc	EcoCyc:EG12372-MONOMER ECOL316407:JW5446-MONOMER
PRO	PR:P38506
Proteomes	UP000000318 UP000000625
Genevestigator	P38506
GO	GO:0017108 GO:0003677 GO:0000287 GO:0030955 GO:0000737 GO:0033567
Gene3D	3.40.50.1010
HAMAP	MF_01192
InterPro	IPR020046 IPR020045 IPR002421 IPR008918 IPR029060 IPR022895
Pfam	PF01367 PF02739
SMART	SM00475 SM00279
SUPFAM	SSF47807 SSF88723

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Extension	Notes	Status
involved_in	GO:0033567	DNA replication, Okazaki fragment processing		ECO:0000314	direct assay evidence used in manual assertion		P		Seeded From UniProt	complete
enables	GO:0030955	potassium ion binding		ECO:0000314	direct assay evidence used in manual assertion		F		Seeded From UniProt	complete
enables	GO:0017108	5'-flap endonuclease activity		ECO:0000314	direct assay evidence used in manual assertion		F		Seeded From UniProt	complete
enables	GO:0003677	DNA binding		ECO:0000314	direct assay evidence used in manual assertion		F		Seeded From UniProt	complete
enables	GO:0000287	magnesium ion binding		ECO:0000314	direct assay evidence used in manual assertion		F		Seeded From UniProt	complete
involved_in	GO:0033567	DNA replication, Okazaki fragment processing		ECO:0000318	biological aspect of ancestor evidence used in manual assertion	EcoGene:EG12372 PANTHER:PTN001604939	P		Seeded From UniProt	complete
enables	GO:0017108	5'-flap endonuclease activity		ECO:0000318	biological aspect of ancestor evidence used in manual assertion	EcoGene:EG12372 PANTHER:PTN001604939	F		Seeded From UniProt	complete
involved_in	GO:0090305	nucleic acid phosphodiester bond hydrolysis	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0004519	P		Seeded From UniProt	complete
involved_in	GO:0090305	nucleic acid phosphodiester bond hydrolysis	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0004518	P		Seeded From UniProt	complete
enables	GO:0003677	DNA binding	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR002421 InterPro:IPR008918 InterPro:IPR020045 InterPro:IPR020046	F		Seeded From UniProt	complete
enables	GO:0003824	catalytic activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR008918 InterPro:IPR020045	F		Seeded From UniProt	complete
enables	GO:0017108	5'-flap endonuclease activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR038969	F		Seeded From UniProt	complete
involved_in	GO:0033567	DNA replication, Okazaki fragment processing	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR038969	P		Seeded From UniProt	complete
enables	GO:0048256	flap endonuclease activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR022895	F		Seeded From UniProt	complete
enables	GO:0017108	5'-flap endonuclease activity	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000100899	F		Seeded From UniProt	complete
involved_in	GO:0033567	DNA replication, Okazaki fragment processing	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000100899	P		Seeded From UniProt	complete
enables	GO:0000287	magnesium ion binding	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000100899	F		Seeded From UniProt	complete
enables	GO:0030955	potassium ion binding	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000100899	F		Seeded From UniProt	complete
enables	GO:0003677	DNA binding	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000100899	F		Seeded From UniProt	complete
enables	GO:0004518	nuclease activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0540	F		Seeded From UniProt	complete
enables	GO:0016787	hydrolase activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0378	F		Seeded From UniProt	complete
enables	GO:0003677	DNA binding	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0238	F		Seeded From UniProt	complete
enables	GO:0004519	endonuclease activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0255	F		Seeded From UniProt	complete
enables	GO:0046872	metal ion binding	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0479	F		Seeded From UniProt	complete
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References

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