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ECOLI:SOXS
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | soxS | |
| Protein Name(s) | Regulatory protein SoxS | |
| External Links | ||
| UniProt | P0A9E2 | |
| EMBL | M60111 X59593 U00006 U00096 AP009048 | |
| PIR | JS0578 | |
| RefSeq | NP_418486.1 YP_492205.1 | |
| ProteinModelPortal | P0A9E2 | |
| SMR | P0A9E2 | |
| DIP | DIP-10904N | |
| IntAct | P0A9E2 | |
| STRING | 511145.b4062 | |
| EnsemblBacteria | AAC77032 BAE78064 | |
| GeneID | 12933024 948567 | |
| KEGG | ecj:Y75_p3949 eco:b4062 | |
| PATRIC | 32123669 | |
| EchoBASE | EB0951 | |
| EcoGene | EG10958 | |
| eggNOG | COG2207 | |
| HOGENOM | HOG000120762 | |
| InParanoid | P0A9E2 | |
| KO | K13631 | |
| OMA | MFRTVTK | |
| OrthoDB | EOG62C9DF | |
| PhylomeDB | P0A9E2 | |
| BioCyc | EcoCyc:PD00406 ECOL316407:JW4023-MONOMER | |
| PRO | PR:P0A9E2 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P0A9E2 | |
| GO | GO:0005737 GO:0000986 GO:0001108 GO:0003700 GO:0006355 GO:0006351 | |
| Gene3D | 1.10.10.60 | |
| InterPro | IPR009057 IPR018060 IPR018062 IPR020449 | |
| Pfam | PF00165 | |
| PRINTS | PR00032 | |
| SMART | SM00342 | |
| SUPFAM | SSF46689 | |
| PROSITE | PS00041 PS01124 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0001108 |
bacterial-type RNA polymerase holo enzyme binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0000986 |
bacterial-type proximal promoter sequence-specific DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0043565 |
sequence-specific DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Lee, JH et al. (2009) SoxRS-mediated lipopolysaccharide modification enhances resistance against multiple drugs in Escherichia coli. J. Bacteriol. 191 4441-50 PubMed GONUTS page
- ↑ Zafar, MA et al. (2010) Protein-protein interactions between sigma(70) region 4 of RNA polymerase and Escherichia coli SoxS, a transcription activator that functions by the prerecruitment mechanism: evidence for "off-DNA" and "on-DNA" interactions. J. Mol. Biol. 401 13-32 PubMed GONUTS page
- ↑ Fawcett, WP & Wolf, RE Jr (1994) Purification of a MalE-SoxS fusion protein and identification of the control sites of Escherichia coli superoxide-inducible genes. Mol. Microbiol. 14 669-79 PubMed GONUTS page
