GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
ECOLI:SGRR
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | sgrR (synonyms: yabN) | |
| Protein Name(s) | HTH-type transcriptional regulator SgrR | |
| External Links | ||
| UniProt | P33595 | |
| EMBL | U00096 AP009048 | |
| PIR | E64728 | |
| RefSeq | NP_414611.1 YP_488375.1 | |
| ProteinModelPortal | P33595 | |
| SMR | P33595 | |
| IntAct | P33595 | |
| STRING | 511145.b0069 | |
| PRIDE | P33595 | |
| EnsemblBacteria | AAC73180 BAB96638 | |
| GeneID | 12934132 944788 | |
| KEGG | ecj:Y75_p0069 eco:b0069 | |
| PATRIC | 32115239 | |
| EchoBASE | EB2018 | |
| EcoGene | EG12094 | |
| eggNOG | COG4533 | |
| HOGENOM | HOG000271136 | |
| InParanoid | P33595 | |
| KO | K11925 | |
| OMA | ARPTHCE | |
| OrthoDB | EOG6SFP6B | |
| PhylomeDB | P33595 | |
| BioCyc | EcoCyc:EG12094-MONOMER ECOL316407:JW0068-MONOMER | |
| PRO | PR:P33595 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P33595 | |
| GO | GO:0003677 GO:0005215 GO:0045892 GO:0045893 GO:0006351 | |
| HAMAP | MF_01449 | |
| InterPro | IPR000914 IPR025370 IPR023767 | |
| Pfam | PF00496 PF12793 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
enables |
GO:1904680 |
peptide transmembrane transporter activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000767645 |
F |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0030288 |
outer membrane-bounded periplasmic space |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10248 |
C |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0045893 |
positive regulation of transcription, DNA-templated |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0045892 |
negative regulation of transcription, DNA-templated |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0000984 |
bacterial-type RNA polymerase regulatory region sequence-specific DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0042886 |
amide transport |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:1904680 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0045892 |
negative regulation of transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000078159 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0045893 |
positive regulation of transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000078159 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Vanderpool, CK & Gottesman, S (2004) Involvement of a novel transcriptional activator and small RNA in post-transcriptional regulation of the glucose phosphoenolpyruvate phosphotransferase system. Mol. Microbiol. 54 1076-89 PubMed GONUTS page
- ↑ 3.0 3.1 Vanderpool, CK & Gottesman, S (2007) The novel transcription factor SgrR coordinates the response to glucose-phosphate stress. J. Bacteriol. 189 2238-48 PubMed GONUTS page
