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ECOLI:SELU
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | selU (synonyms: ybbB) | |
| Protein Name(s) | tRNA 2-selenouridine synthase
Selenophosphate-dependent tRNA 2-selenouridine synthase | |
| External Links | ||
| UniProt | P33667 | |
| EMBL | U82664 U00096 AP009048 X60999 | |
| PIR | F64781 | |
| RefSeq | NP_415036.1 YP_488793.1 | |
| ProteinModelPortal | P33667 | |
| SMR | P33667 | |
| IntAct | P33667 | |
| STRING | 511145.b0503 | |
| PaxDb | P33667 | |
| PRIDE | P33667 | |
| EnsemblBacteria | AAC73605 BAE76281 | |
| GeneID | 12930876 947063 | |
| KEGG | ecj:Y75_p0489 eco:b0503 | |
| PATRIC | 32116165 | |
| EchoBASE | EB1718 | |
| EcoGene | EG11768 | |
| eggNOG | COG2603 | |
| HOGENOM | HOG000260000 | |
| InParanoid | P33667 | |
| KO | K06917 | |
| OMA | PVEFAKG | |
| OrthoDB | EOG6M3PB3 | |
| PhylomeDB | P33667 | |
| BioCyc | EcoCyc:EG11768-MONOMER ECOL316407:JW0491-MONOMER MetaCyc:EG11768-MONOMER | |
| PRO | PR:P33667 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P33667 | |
| GO | GO:0043828 GO:0070329 GO:0002098 | |
| Gene3D | 3.40.250.10 | |
| HAMAP | MF_01622 | |
| InterPro | IPR001763 IPR017582 | |
| Pfam | PF00581 | |
| SMART | SM00450 | |
| SUPFAM | SSF52821 | |
| TIGRFAMs | TIGR03167 | |
| PROSITE | PS50206 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
enables |
GO:0043828 |
tRNA 2-selenouridine synthase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG11768 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0002098 |
tRNA wobble uridine modification |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG11768 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0070329 |
tRNA seleno-modification |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0043828 |
tRNA 2-selenouridine synthase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0002098 |
tRNA wobble uridine modification |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0002098 |
tRNA wobble uridine modification |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016785 |
transferase activity, transferring selenium-containing groups |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0043828 |
tRNA 2-selenouridine synthase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0070329 |
tRNA seleno-modification |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016785 |
transferase activity, transferring selenium-containing groups |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000080055 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0016765 |
transferase activity, transferring alkyl or aryl (other than methyl) groups |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000080055 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0002098 |
tRNA wobble uridine modification |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000080055 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0016740 |
transferase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 Wolfe, MD et al. (2004) Functional diversity of the rhodanese homology domain: the Escherichia coli ybbB gene encodes a selenophosphate-dependent tRNA 2-selenouridine synthase. J. Biol. Chem. 279 1801-9 PubMed GONUTS page
- ↑ Dumelin, CE et al. (2012) Discovery and biological characterization of geranylated RNA in bacteria. Nat. Chem. Biol. 8 913-9 PubMed GONUTS page
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