GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
ECOLI:SBCD
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | sbcD (synonyms: yajA) | |
| Protein Name(s) | Nuclease SbcCD subunit D | |
| External Links | ||
| UniProt | P0AG76 | |
| EMBL | X15981 U73857 U00096 AP009048 | |
| PIR | JS0349 | |
| RefSeq | NP_414932.1 WP_001221319.1 | |
| ProteinModelPortal | P0AG76 | |
| SMR | P0AG76 | |
| DIP | DIP-10828N | |
| IntAct | P0AG76 | |
| STRING | 511145.b0398 | |
| PaxDb | P0AG76 | |
| EnsemblBacteria | AAC73501 BAE76178 | |
| GeneID | 945049 | |
| KEGG | ecj:JW0388 eco:b0398 | |
| PATRIC | 32115939 | |
| EchoBASE | EB1086 | |
| EcoGene | EG11094 | |
| eggNOG | ENOG4107RH8 COG0420 | |
| HOGENOM | HOG000026261 | |
| InParanoid | P0AG76 | |
| KO | K03547 | |
| OMA | DAFDTVN | |
| OrthoDB | EOG60CWP4 | |
| PhylomeDB | P0AG76 | |
| BioCyc | EcoCyc:EG11094-MONOMER ECOL316407:JW0388-MONOMER | |
| PRO | PR:P0AG76 | |
| Proteomes | UP000000318 UP000000625 | |
| GO | GO:0008408 GO:0004519 GO:0006259 GO:0006310 GO:0006260 | |
| Gene3D | 3.60.21.10 | |
| InterPro | IPR004843 IPR029052 IPR004593 IPR026843 | |
| Pfam | PF00149 PF12320 | |
| SUPFAM | SSF56300 | |
| TIGRFAMs | TIGR00619 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
enables |
GO:1990238 |
double-stranded DNA endodeoxyribonuclease activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006281 |
DNA repair |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0004529 |
exodeoxyribonuclease activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0000014 |
single-stranded DNA endodeoxyribonuclease activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0090305 |
nucleic acid phosphodiester bond hydrolysis |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0008408 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0090305 |
nucleic acid phosphodiester bond hydrolysis |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0004519 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0090305 |
nucleic acid phosphodiester bond hydrolysis |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0004527 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0090305 |
nucleic acid phosphodiester bond hydrolysis |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0004518 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0004519 |
endonuclease activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006259 |
DNA metabolic process |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0008408 |
3'-5' exonuclease activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016787 |
hydrolase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016787 |
hydrolase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0004527 |
exonuclease activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0004519 |
endonuclease activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0004518 |
nuclease activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006260 |
DNA replication |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006310 |
DNA recombination |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Connelly, JC et al. (1998) The SbcCD nuclease of Escherichia coli is a structural maintenance of chromosomes (SMC) family protein that cleaves hairpin DNA. Proc. Natl. Acad. Sci. U.S.A. 95 7969-74 PubMed GONUTS page
- ↑ Eykelenboom, JK et al. (2008) SbcCD causes a double-strand break at a DNA palindrome in the Escherichia coli chromosome. Mol. Cell 29 644-51 PubMed GONUTS page
- ↑ 3.0 3.1 Connelly, JC & Leach, DR (1996) The sbcC and sbcD genes of Escherichia coli encode a nuclease involved in palindrome inviability and genetic recombination. Genes Cells 1 285-91 PubMed GONUTS page
b
d
e
