GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
ECOLI:RPOD
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | rpoD (ECO:0000255 with HAMAP-Rule:MF_00963) (synonyms: alt) | |
| Protein Name(s) | RNA polymerase sigma factor RpoD (ECO:0000255 with HAMAP-Rule:MF_00963)
Sigma-70 (ECO:0000255 with HAMAP-Rule:MF_00963) | |
| External Links | ||
| UniProt | P00579 | |
| EMBL | J01687 U28379 U00096 AP009048 | |
| PIR | A65095 | |
| RefSeq | NP_417539.1 YP_491259.1 | |
| PDB | 1SIG 1TLH 2P7V 3IYD 3T72 4IGC 4JK1 4JK2 4JKR 4KMU 4KN4 4KN7 4LJZ 4LK0 4LK1 4LLG 4MEX 4MEY | |
| PDBsum | 1SIG 1TLH 2P7V 3IYD 3T72 4IGC 4JK1 4JK2 4JKR 4KMU 4KN4 4KN7 4LJZ 4LK0 4LK1 4LLG 4MEX 4MEY | |
| ProteinModelPortal | P00579 | |
| SMR | P00579 | |
| DIP | DIP-10773N | |
| IntAct | P00579 | |
| MINT | MINT-1220595 | |
| STRING | 511145.b3067 | |
| PaxDb | P00579 | |
| PRIDE | P00579 | |
| EnsemblBacteria | AAC76103 BAE77118 | |
| GeneID | 12932074 947567 | |
| KEGG | ecj:Y75_p2993 eco:b3067 | |
| PATRIC | 32121550 | |
| EchoBASE | EB0889 | |
| EcoGene | EG10896 | |
| eggNOG | COG0568 | |
| HOGENOM | HOG000270272 | |
| InParanoid | P00579 | |
| KO | K03086 | |
| OMA | EMPEDKV | |
| OrthoDB | EOG6XHC70 | |
| PhylomeDB | P00579 | |
| BioCyc | EcoCyc:RPOD-MONOMER ECOL316407:JW3039-MONOMER MetaCyc:RPOD-MONOMER | |
| EvolutionaryTrace | P00579 | |
| PRO | PR:P00579 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P00579 | |
| GO | GO:0005737 GO:0003677 GO:0003700 GO:0016987 GO:0009408 GO:0001123 | |
| Gene3D | 1.10.10.10 | |
| HAMAP | MF_00963 | |
| InterPro | IPR014284 IPR000943 IPR009042 IPR007627 IPR007624 IPR007630 IPR007631 IPR007127 IPR013325 IPR013324 IPR012760 IPR028630 IPR011991 | |
| Pfam | PF04546 PF03979 PF00140 PF04542 PF04539 PF04545 | |
| PRINTS | PR00046 | |
| SUPFAM | SSF88659 SSF88946 | |
| TIGRFAMs | TIGR02393 TIGR02937 | |
| PROSITE | PS00715 PS00716 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
enables |
GO:0016987 |
sigma factor activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0009408 |
response to heat |
ECO:0000270 |
expression pattern evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005829 |
cytosol |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:2000142 |
regulation of DNA-templated transcription, initiation |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0016987 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:2000142 |
regulation of DNA-templated transcription, initiation |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0016987 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:2000142 |
regulation of DNA-templated transcription, initiation |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0016987 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:2000142 |
regulation of DNA-templated transcription, initiation |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0016987 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR007127 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR000943 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006352 |
DNA-templated transcription, initiation |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR000943 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR000943 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0016987 |
sigma factor activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
InterPro:IPR007631 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000184638 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0016987 |
sigma factor activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000184638 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0010468 |
regulation of gene expression |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000184638 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000184638 |
C |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0001123 |
transcription initiation from bacterial-type RNA polymerase promoter |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000184638 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0016987 |
sigma factor activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Burgess, RR et al. (1969) Factor stimulating transcription by RNA polymerase. Nature 221 43-6 PubMed GONUTS page
- ↑ Chuang, SE & Blattner, FR (1993) Characterization of twenty-six new heat shock genes of Escherichia coli. J. Bacteriol. 175 5242-52 PubMed GONUTS page
- ↑ Ishihama, Y et al. (2008) Protein abundance profiling of the Escherichia coli cytosol. BMC Genomics 9 102 PubMed GONUTS page
b
d
r
