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ECOLI:RP5M
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | hpf (synonyms: yhbH) | |
| Protein Name(s) | Ribosome hibernation promoting factor | |
| External Links | ||
| UniProt | P0AFX0 | |
| EMBL | D12938 Z27094 U12684 U18997 U00096 AP009048 | |
| PIR | I76719 | |
| RefSeq | NP_417670.1 YP_491388.1 | |
| PDB | 2RQL 4V8H | |
| PDBsum | 2RQL 4V8H | |
| ProteinModelPortal | P0AFX0 | |
| SMR | P0AFX0 | |
| DIP | DIP-48273N | |
| IntAct | P0AFX0 | |
| MINT | MINT-1249576 | |
| STRING | 511145.b3203 | |
| PaxDb | P0AFX0 | |
| PRIDE | P0AFX0 | |
| EnsemblBacteria | AAC76235 BAE77247 | |
| GeneID | 12930289 947718 | |
| KEGG | ecj:Y75_p3123 eco:b3203 | |
| PATRIC | 32121826 | |
| EchoBASE | EB1632 | |
| EcoGene | EG11681 | |
| eggNOG | COG1544 | |
| HOGENOM | HOG000264773 | |
| InParanoid | P0AFX0 | |
| KO | K05808 | |
| OMA | NLTGHHI | |
| OrthoDB | EOG618R0J | |
| PhylomeDB | P0AFX0 | |
| BioCyc | EcoCyc:EG11681-MONOMER ECOL316407:JW3170-MONOMER | |
| EvolutionaryTrace | P0AFX0 | |
| PRO | PR:P0AFX0 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P0AFX0 | |
| GO | GO:0043024 GO:0043022 GO:0017148 GO:0044238 | |
| Gene3D | 3.30.160.100 | |
| InterPro | IPR003489 | |
| Pfam | PF02482 | |
| SUPFAM | SSF69754 | |
| TIGRFAMs | TIGR00741 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0031118 |
rRNA pseudouridine synthesis |
ECO:0000315 |
P |
Figure 2. YhbH converts immature 90S particles to mature 100S ribosomal particles by promoting both particle formation and stabilization. |
complete | |||||
|
involved_in |
GO:0045900 |
negative regulation of translational elongation |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG11151 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0043024 |
ribosomal small subunit binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG11151 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0043022 |
ribosome binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG11681 |
F |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0022627 |
cytosolic small ribosomal subunit |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG11151 |
C |
Seeded From UniProt |
complete | ||
|
enables |
GO:0043024 |
ribosomal small subunit binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0043022 |
ribosome binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0017148 |
negative regulation of translation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005829 |
cytosol |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0044238 |
primary metabolic process |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006417 |
regulation of translation |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Ueta, M et al. (2005) Ribosome binding proteins YhbH and YfiA have opposite functions during 100S formation in the stationary phase of Escherichia coli. Genes Cells 10 1103-12 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Polikanov, YS et al. (2012) How hibernation factors RMF, HPF, and YfiA turn off protein synthesis. Science 336 915-8 PubMed GONUTS page
- ↑ Maki, Y et al. (2000) Two proteins, YfiA and YhbH, associated with resting ribosomes in stationary phase Escherichia coli. Genes Cells 5 965-74 PubMed GONUTS page
- ↑ Ueta, M et al. (2008) Role of HPF (hibernation promoting factor) in translational activity in Escherichia coli. J. Biochem. 143 425-33 PubMed GONUTS page
- ↑ Ishihama, Y et al. (2008) Protein abundance profiling of the Escherichia coli cytosol. BMC Genomics 9 102 PubMed GONUTS page
