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ECOLI:RIBD
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | ribD (synonyms: ribG, ybaE) | |
| Protein Name(s) | Riboflavin biosynthesis protein RibD
Diaminohydroxyphosphoribosylaminopyrimidine deaminase DRAP deaminase Riboflavin-specific deaminase 5-amino-6-(5-phosphoribosylamino)uracil reductase HTP reductase | |
| External Links | ||
| UniProt | P25539 | |
| EMBL | X64395 U82664 U00096 AP009048 | |
| PIR | S26201 | |
| RefSeq | NP_414948.1 YP_488706.1 | |
| PDB | 2G6V 2O7P 2OBC | |
| PDBsum | 2G6V 2O7P 2OBC | |
| ProteinModelPortal | P25539 | |
| SMR | P25539 | |
| DIP | DIP-10708N | |
| IntAct | P25539 | |
| MINT | MINT-1221612 | |
| STRING | 511145.b0414 | |
| PaxDb | P25539 | |
| PRIDE | P25539 | |
| EnsemblBacteria | AAC73517 BAE76194 | |
| GeneID | 12934255 945620 | |
| KEGG | ecj:Y75_p0402 eco:b0414 | |
| PATRIC | 32115977 | |
| EchoBASE | EB1297 | |
| EcoGene | EG11321 | |
| eggNOG | COG0117 | |
| HOGENOM | HOG000257442 | |
| InParanoid | P25539 | |
| KO | K11752 | |
| OMA | MRTGFPW | |
| OrthoDB | EOG66F07R | |
| PhylomeDB | P25539 | |
| BioCyc | EcoCyc:RIBOFLAVINSYNDEAM-MONOMER ECOL316407:JW0404-MONOMER MetaCyc:RIBOFLAVINSYNDEAM-MONOMER | |
| UniPathway | UPA00275 UPA00275 | |
| EvolutionaryTrace | P25539 | |
| PRO | PR:P25539 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P25539 | |
| GO | GO:0008703 GO:0008835 GO:0050661 GO:0008270 GO:0009231 | |
| Gene3D | 3.40.430.10 | |
| InterPro | IPR016192 IPR002125 IPR016193 IPR024072 IPR004794 IPR011549 IPR002734 | |
| Pfam | PF00383 PF01872 | |
| PIRSF | PIRSF006769 | |
| SUPFAM | SSF53597 SSF53927 | |
| TIGRFAMs | TIGR00326 TIGR00227 | |
| PROSITE | PS00903 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
enables |
GO:0008835 |
diaminohydroxyphosphoribosylaminopyrimidine deaminase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG11321 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0050661 |
NADP binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0009231 |
riboflavin biosynthetic process |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0008835 |
diaminohydroxyphosphoribosylaminopyrimidine deaminase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0008835 |
diaminohydroxyphosphoribosylaminopyrimidine deaminase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0008703 |
5-amino-6-(5-phosphoribosylamino)uracil reductase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0008703 |
5-amino-6-(5-phosphoribosylamino)uracil reductase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003824 |
catalytic activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0008270 |
zinc ion binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0008703 |
5-amino-6-(5-phosphoribosylamino)uracil reductase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0008835 |
diaminohydroxyphosphoribosylaminopyrimidine deaminase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0009231 |
riboflavin biosynthetic process |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016787 |
hydrolase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0050661 |
NADP binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0055114 |
oxidation-reduction process |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0008703 |
5-amino-6-(5-phosphoribosylamino)uracil reductase activity |
ECO:0000501 |
evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0008835 |
diaminohydroxyphosphoribosylaminopyrimidine deaminase activity |
ECO:0000501 |
evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0009231 |
riboflavin biosynthetic process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniProtKB-KW:KW-0686 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0016787 |
hydrolase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003824 |
catalytic activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0055114 |
oxidation-reduction process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0008152 |
metabolic process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016491 |
oxidoreductase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0046872 |
metal ion binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 Magalhães, ML et al. (2008) Kinetic and mechanistic analysis of the Escherichia coli ribD-encoded bifunctional deaminase-reductase involved in riboflavin biosynthesis. Biochemistry 47 6499-507 PubMed GONUTS page
- ↑ 3.0 3.1 Richter, G et al. (1997) Biosynthesis of riboflavin: characterization of the bifunctional deaminase-reductase of Escherichia coli and Bacillus subtilis. J. Bacteriol. 179 2022-8 PubMed GONUTS page
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