GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
ECOLI:RHLE
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | rhlE (ECO:0000255 with HAMAP-Rule:MF_00968) | |
| Protein Name(s) | ATP-dependent RNA helicase RhlE (ECO:0000255 with HAMAP-Rule:MF_00968) | |
| External Links | ||
| UniProt | P25888 | |
| EMBL | L02123 U00096 AP009048 X56307 | |
| PIR | E64816 | |
| RefSeq | NP_415318.1 YP_489070.1 | |
| ProteinModelPortal | P25888 | |
| SMR | P25888 | |
| DIP | DIP-10697N | |
| IntAct | P25888 | |
| MINT | MINT-1313387 | |
| STRING | 511145.b0797 | |
| PaxDb | P25888 | |
| PRIDE | P25888 | |
| EnsemblBacteria | AAC73884 BAA35457 | |
| GeneID | 12930968 945425 | |
| KEGG | ecj:Y75_p0770 eco:b0797 | |
| PATRIC | 32116795 | |
| EchoBASE | EB1217 | |
| EcoGene | EG11235 | |
| eggNOG | COG0513 | |
| HOGENOM | HOG000268807 | |
| InParanoid | P25888 | |
| KO | K11927 | |
| OMA | QAIHGNK | |
| OrthoDB | EOG6GBMBM | |
| PhylomeDB | P25888 | |
| BioCyc | EcoCyc:EG11235-MONOMER ECOL316407:JW0781-MONOMER | |
| PRO | PR:P25888 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P25888 | |
| GO | GO:0005737 GO:0005524 GO:0004004 GO:0003723 GO:0006200 GO:0009408 GO:0042255 | |
| Gene3D | 3.40.50.300 | |
| HAMAP | MF_00968 | |
| InterPro | IPR011545 IPR028622 IPR014001 IPR001650 IPR027417 IPR000629 IPR014014 | |
| Pfam | PF00270 PF00271 | |
| SMART | SM00487 SM00490 | |
| SUPFAM | SSF52540 | |
| PROSITE | PS00039 PS51192 PS51194 PS51195 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
involved_in |
GO:0042255 |
ribosome assembly |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0009408 |
response to heat |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005829 |
cytosol |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0004004 |
ATP-dependent RNA helicase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003676 |
nucleic acid binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0004004 |
ATP-dependent RNA helicase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0005524 |
ATP binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0042255 |
ribosome assembly |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0005524 |
ATP binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000112452 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0042254 |
ribosome biogenesis |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000112452 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000112452 |
C |
Seeded From UniProt |
complete | ||
|
enables |
GO:0004004 |
ATP-dependent RNA helicase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000112452 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0005524 |
ATP binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0004386 |
helicase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016787 |
hydrolase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003723 |
RNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0000166 |
nucleotide binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0042254 |
ribosome biogenesis |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Jain, C (2008) The E. coli RhlE RNA helicase regulates the function of related RNA helicases during ribosome assembly. RNA 14 381-9 PubMed GONUTS page
- ↑ Krisko, A et al. (2014) Inferring gene function from evolutionary change in signatures of translation efficiency. Genome Biol. 15 R44 PubMed GONUTS page
- ↑ Ishihama, Y et al. (2008) Protein abundance profiling of the Escherichia coli cytosol. BMC Genomics 9 102 PubMed GONUTS page
- ↑ Bizebard, T et al. (2004) Studies on three E. coli DEAD-box helicases point to an unwinding mechanism different from that of model DNA helicases. Biochemistry 43 7857-66 PubMed GONUTS page
b
