ECOLI:PDXJ

Species (Taxon ID)	Escherichia coli (strain K12). (83333)
Gene Name(s)	pdxJ
Protein Name(s)	Pyridoxine 5'-phosphate synthase PNP synthase
External Links
UniProt	P0A794
EMBL	M76470 M74526 D64044 U36841 U00096 AP009048
PIR	A42293
RefSeq	NP_417059.1 YP_490792.1
PDB	1HO1 1HO4 1IXN 1IXO 1IXP 1IXQ 1M5W
PDBsum	1HO1 1HO4 1IXN 1IXO 1IXP 1IXQ 1M5W
ProteinModelPortal	P0A794
SMR	P0A794
DIP	DIP-36215N
IntAct	P0A794
MINT	MINT-1227457
STRING	511145.b2564
PaxDb	P0A794
PRIDE	P0A794
EnsemblBacteria	AAC75617 BAE76740
GeneID	12931607 947039
KEGG	ecj:Y75_p2517 eco:b2564
PATRIC	32120527
EchoBASE	EB0687
EcoGene	EG10693
eggNOG	COG0854
HOGENOM	HOG000258095
InParanoid	P0A794
KO	K03474
OMA	GMEELNI
OrthoDB	EOG6M9F0H
PhylomeDB	P0A794
BioCyc	EcoCyc:PDXJ-MONOMER ECOL316407:JW2548-MONOMER MetaCyc:PDXJ-MONOMER
UniPathway	UPA00244
EvolutionaryTrace	P0A794
PRO	PR:P0A794
Proteomes	UP000000318 UP000000625
Genevestigator	P0A794
GO	GO:0005829 GO:0033856 GO:0008615
Gene3D	3.20.20.70
HAMAP	MF_00279
InterPro	IPR013785 IPR004569
Pfam	PF03740
SUPFAM	SSF63892
TIGRFAMs	TIGR00559

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Notes	Status
part_of	GO:0005829	cytosol	PMID:16858726^[1]	ECO:0007005	high throughput direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
enables	GO:0033856	pyridoxine 5'-phosphate synthase activity	PMID:21873635^[2]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	EcoGene:EG10693 PANTHER:PTN000765245	F	Seeded From UniProt	complete
involved_in	GO:0008615	pyridoxine biosynthetic process	PMID:21873635^[2]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	EcoGene:EG10693 PANTHER:PTN000765245	P	Seeded From UniProt	complete
part_of	GO:0005829	cytosol	PMID:21873635^[2]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	EcoGene:EG10693 PANTHER:PTN000765245	C	Seeded From UniProt	complete
involved_in	GO:0008615	pyridoxine biosynthetic process	PMID:1537799^[3]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
enables	GO:0042802	identical protein binding	PMID:10944349^[4]	ECO:0000314	direct assay evidence used in manual assertion		F	Seeded From UniProt	complete
enables	GO:0033856	pyridoxine 5'-phosphate synthase activity	PMID:10225425^[5]	ECO:0000314	direct assay evidence used in manual assertion		F	Seeded From UniProt	complete
part_of	GO:0005829	cytosol	PMID:18304323^[6]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
enables	GO:0003824	catalytic activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR013785	F	Seeded From UniProt	complete
part_of	GO:0005737	cytoplasm	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR004569 InterPro:IPR036130	C	Seeded From UniProt	complete
involved_in	GO:0008615	pyridoxine biosynthetic process	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR004569 InterPro:IPR036130	P	Seeded From UniProt	complete
enables	GO:0033856	pyridoxine 5'-phosphate synthase activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR004569 InterPro:IPR036130	F	Seeded From UniProt	complete
enables	GO:0033856	pyridoxine 5'-phosphate synthase activity	GO_REF:0000003	ECO:0000501	evidence used in automatic assertion	EC:2.6.99.2	F	Seeded From UniProt	complete
involved_in	GO:0008615	pyridoxine biosynthetic process	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000083111	P	Seeded From UniProt	complete
enables	GO:0016769	transferase activity, transferring nitrogenous groups	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000083111	F	Seeded From UniProt	complete
part_of	GO:0005737	cytoplasm	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000083111	C	Seeded From UniProt	complete
enables	GO:0016740	transferase activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0808	F	Seeded From UniProt	complete
part_of	GO:0005737	cytoplasm	GO_REF:0000037 GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0963 UniProtKB-SubCell:SL-0086	C	Seeded From UniProt	complete
involved_in	GO:0008615	pyridoxine biosynthetic process	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0664	P	Seeded From UniProt	complete
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Notes

References

See Help:References for how to manage references in GONUTS.

↑ Lasserre, JP et al. (2006) A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Electrophoresis 27 3306-21 PubMed GONUTS page
↑ ^2.0 ^2.1 ^2.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
↑ Takiff, HE et al. (1992) Locating essential Escherichia coli genes by using mini-Tn10 transposons: the pdxJ operon. J. Bacteriol. 174 1544-53 PubMed GONUTS page
↑ Garrido Franco, M et al. (2000) Crystallization and preliminary X-ray crystallographic analysis of PdxJ, the pyridoxine 5'-phosphate synthesizing enzyme. Acta Crystallogr. D Biol. Crystallogr. 56 1045-8 PubMed GONUTS page
↑ Laber, B et al. (1999) Vitamin B6 biosynthesis: formation of pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate by PdxA and PdxJ protein. FEBS Lett. 449 45-8 PubMed GONUTS page
↑ Ishihama, Y et al. (2008) Protein abundance profiling of the Escherichia coli cytosol. BMC Genomics 9 102 PubMed GONUTS page

[PMID:16858726-1] Lasserre, JP et al. (2006) A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Electrophoresis 27 3306-21 PubMed GONUTS page

[PMID:21873635-2] 2.0 ^2.1 ^2.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

[PMID:1537799-3] Takiff, HE et al. (1992) Locating essential Escherichia coli genes by using mini-Tn10 transposons: the pdxJ operon. J. Bacteriol. 174 1544-53 PubMed GONUTS page

[PMID:10944349-4] Garrido Franco, M et al. (2000) Crystallization and preliminary X-ray crystallographic analysis of PdxJ, the pyridoxine 5'-phosphate synthesizing enzyme. Acta Crystallogr. D Biol. Crystallogr. 56 1045-8 PubMed GONUTS page

[PMID:10225425-5] Laber, B et al. (1999) Vitamin B6 biosynthesis: formation of pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate by PdxA and PdxJ protein. FEBS Lett. 449 45-8 PubMed GONUTS page

[PMID:18304323-6] Ishihama, Y et al. (2008) Protein abundance profiling of the Escherichia coli cytosol. BMC Genomics 9 102 PubMed GONUTS page

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ECOLI:PDXJ

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