GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
ECOLI:PAAX
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | paaX (synonyms: ydbY) | |
| Protein Name(s) | Transcriptional repressor PaaX | |
| External Links | ||
| UniProt | P76086 | |
| EMBL | X97452 U00096 AP009048 | |
| PIR | B64891 | |
| RefSeq | NP_415917.1 YP_489668.1 | |
| ProteinModelPortal | P76086 | |
| SMR | P76086 | |
| DIP | DIP-10431N | |
| IntAct | P76086 | |
| STRING | 511145.b1399 | |
| PaxDb | P76086 | |
| EnsemblBacteria | AAC74481 BAE76429 | |
| GeneID | 12934020 945966 | |
| KEGG | ecj:Y75_p1376 eco:b1399 | |
| PATRIC | 32118084 | |
| EchoBASE | EB3509 | |
| EcoGene | EG13746 | |
| eggNOG | COG3327 | |
| HOGENOM | HOG000147151 | |
| InParanoid | P76086 | |
| KO | K02616 | |
| OMA | LLIHEYR | |
| OrthoDB | EOG6TBHDM | |
| PhylomeDB | P76086 | |
| BioCyc | EcoCyc:G6720-MONOMER ECOL316407:JW1394-MONOMER | |
| UniPathway | UPA00930 | |
| PRO | PR:P76086 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P76086 | |
| GO | GO:0003677 GO:0010124 GO:0006355 GO:0006351 | |
| InterPro | IPR012906 IPR013225 IPR011965 | |
| Pfam | PF07848 PF08223 | |
| PIRSF | PIRSF020623 | |
| TIGRFAMs | TIGR02277 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0016564 |
transcription repressor activity |
ECO:0000315 |
F |
Table III: Disrupting paaX by Tn1000 results in constitutive expression of the paa-encoded pathway; Table IV: Reporter gene showed reduction in expression by several orders of magnitude in cells containing plasmids for paaX and paaK |
complete | |||||
| GO:0006355 |
regulation of transcription, DNA-dependent |
ECO:0000315 |
P |
Table III; Table IV |
complete | |||||
|
involved_in |
GO:0010124 |
phenylacetate catabolic process |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:2000143 |
negative regulation of DNA-templated transcription, initiation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006351 |
transcription, DNA-templated |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0000984 |
bacterial-type RNA polymerase regulatory region sequence-specific DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006351 |
transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0010124 |
phenylacetate catabolic process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniPathway:UPA00930 |
P |
Seeded From UniProt |
complete | ||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 Ferrández, A et al. (1998) Catabolism of phenylacetic acid in Escherichia coli. Characterization of a new aerobic hybrid pathway. J. Biol. Chem. 273 25974-86 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 Ferrández, A et al. (2000) Transcriptional regulation of the divergent paa catabolic operons for phenylacetic acid degradation in Escherichia coli. J. Biol. Chem. 275 12214-22 PubMed GONUTS page
