GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
ECOLI:OMPW
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | ompW (synonyms: yciD) | |
| Protein Name(s) | Outer membrane protein W | |
| External Links | ||
| UniProt | P0A915 | |
| EMBL | X13583 U00096 AP009048 U24195 U24196 U24197 U24198 U24199 U24200 U24201 U24202 U24203 U24204 U24205 U24206 | |
| PIR | S07797 T45501 | |
| RefSeq | NP_415772.1 YP_489524.1 | |
| PDB | 2F1T 2F1V | |
| PDBsum | 2F1T 2F1V | |
| ProteinModelPortal | P0A915 | |
| SMR | P0A915 | |
| IntAct | P0A915 | |
| STRING | 511145.b1256 | |
| PRIDE | P0A915 | |
| EnsemblBacteria | AAC74338 BAA14788 | |
| GeneID | 12934006 945128 | |
| KEGG | ecj:Y75_p1230 eco:b1256 | |
| PATRIC | 32117772 | |
| EchoBASE | EB1114 | |
| EcoGene | EG11124 | |
| eggNOG | COG3047 | |
| HOGENOM | HOG000217796 | |
| InParanoid | P0A915 | |
| KO | K07275 | |
| OMA | PWVYMVG | |
| OrthoDB | EOG63RGQV | |
| PhylomeDB | P0A915 | |
| BioCyc | EcoCyc:EG11124-MONOMER ECOL316407:JW1248-MONOMER | |
| EvolutionaryTrace | P0A915 | |
| PRO | PR:P0A915 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P0A915 | |
| GO | GO:0009279 GO:0016021 | |
| Gene3D | 2.40.160.20 | |
| InterPro | IPR017690 IPR011250 IPR005618 | |
| Pfam | PF03922 | |
| SUPFAM | SSF56925 | |
| TIGRFAMs | TIGR03304 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0009279 |
cell outer membrane |
ECO:0000314 |
C |
Table 1 |
complete | |||||
|
involved_in |
GO:0055085 |
transmembrane transport |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN002199661 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0009279 |
cell outer membrane |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG11124 |
C |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0009279 |
cell outer membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0009279 |
cell outer membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0009279 |
cell outer membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0019867 |
outer membrane |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016021 |
integral component of membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0009279 |
cell outer membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016020 |
membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Molloy, MP et al. (2000) Proteomic analysis of the Escherichia coli outer membrane. Eur. J. Biochem. 267 2871-81 PubMed GONUTS page
- ↑ 2.0 2.1 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Han, MJ et al. (2012) Comparative analysis of envelope proteomes in Escherichia coli B and K-12 strains. J. Microbiol. Biotechnol. 22 470-8 PubMed GONUTS page
- ↑ Lopez-Campistrous, A et al. (2005) Localization, annotation, and comparison of the Escherichia coli K-12 proteome under two states of growth. Mol. Cell Proteomics 4 1205-9 PubMed GONUTS page
