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ECOLI:NIRC
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | nirC | |
| Protein Name(s) | Nitrite transporter NirC | |
| External Links | ||
| UniProt | P0AC26 | |
| EMBL | X14202 U18997 U00096 AP009048 | |
| PIR | B65131 | |
| RefSeq | YP_026212.2 YP_492064.1 | |
| ProteinModelPortal | P0AC26 | |
| SMR | P0AC26 | |
| STRING | 511145.b3367 | |
| TCDB | 1.A.16.3.1 | |
| EnsemblBacteria | AAC76392 BAE77923 | |
| GeneID | 12933483 2847757 | |
| KEGG | ecj:Y75_p3808 eco:b3367 | |
| PATRIC | 32122168 | |
| EchoBASE | EB0648 | |
| EcoGene | EG10654 | |
| eggNOG | COG2116 | |
| HOGENOM | HOG000271392 | |
| InParanoid | P0AC26 | |
| KO | K02598 | |
| OMA | AIRTEGA | |
| OrthoDB | EOG661HBX | |
| PhylomeDB | P0AC26 | |
| BioCyc | EcoCyc:NIRC-MONOMER ECOL316407:JW3330-MONOMER MetaCyc:NIRC-MONOMER | |
| PRO | PR:P0AC26 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P0AC26 | |
| GO | GO:0016021 GO:0005886 GO:0015513 GO:0042128 GO:0015707 | |
| Gene3D | 1.20.1080.10 | |
| InterPro | IPR023271 IPR000292 IPR024002 | |
| Pfam | PF01226 | |
| TIGRFAMs | TIGR00790 | |
| PROSITE | PS01005 PS01006 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0016021 |
integral to membrane |
ECO:0000255 |
|
C |
Figure 5: shows the hydrophobicity of a few nitrate reductase proteins. NirB, NirD, and CysG had relatively equal values of hydrophobic and hydrophilic residues, which indicated that it more closely resembled a protein found inside the cell such as a cytoplasmic protein. On the other hand, NirC had an abundance of hydrophobic residues, which indicates it may be part of the membrane. NirC has also been found to be comparable to a subunit that is part of the cytochrome oxidase polypeptide 1, which is a membrane bound chain of amino acids. Eisenberg and McLachlan created a model to calculate hydrophobicity and amphiphilcity that was used to determine the hydrophobicity of all of these proteins. |
complete | ||||
|
part_of |
GO:0016021 |
integral component of membrane |
ECO:0000255 |
match to sequence model evidence used in manual assertion |
C |
Seeded From UniProt |
Missing: with/from | |||
|
involved_in |
GO:0015707 |
nitrite transport |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10654 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0015513 |
high-affinity secondary active nitrite transmembrane transporter activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10654 |
F |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005887 |
integral component of plasma membrane |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG11258 |
C |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005886 |
plasma membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0015706 |
nitrate transport |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0015513 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0016020 |
membrane |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0022857 |
transmembrane transporter activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0055085 |
transmembrane transport |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016020 |
membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0042128 |
nitrate assimilation |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005886 |
plasma membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
UniProtKB-KW:KW-1003 |
C |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0016021 |
integral component of membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Peakman, T et al. (1990) Nucleotide sequence, organisation and structural analysis of the products of genes in the nirB-cysG region of the Escherichia coli K-12 chromosome. Eur. J. Biochem. 191 315-23 PubMed GONUTS page
- ↑ Eisenberg, D & McLachlan, AD () Solvation energy in protein folding and binding. Nature 319 199-203 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed GONUTS page
