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ECOLI:NARL
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | narL (synonyms: frdR) | |
| Protein Name(s) | Nitrate/nitrite response regulator protein NarL | |
| External Links | ||
| UniProt | P0AF28 | |
| EMBL | X13360 M24910 X14884 X69189 U00096 AP009048 | |
| PIR | S09285 | |
| RefSeq | NP_415739.1 YP_489491.1 | |
| PDB | 1A04 1JE8 1RNL 1ZG1 1ZG5 | |
| PDBsum | 1A04 1JE8 1RNL 1ZG1 1ZG5 | |
| ProteinModelPortal | P0AF28 | |
| SMR | P0AF28 | |
| DIP | DIP-35941N | |
| IntAct | P0AF28 | |
| STRING | 511145.b1221 | |
| PaxDb | P0AF28 | |
| PRIDE | P0AF28 | |
| EnsemblBacteria | AAC74305 BAA36089 | |
| GeneID | 12932638 945795 | |
| KEGG | ecj:Y75_p1196 eco:b1221 | |
| PATRIC | 32117700 | |
| EchoBASE | EB0637 | |
| EcoGene | EG10643 | |
| eggNOG | COG2197 | |
| HOGENOM | HOG000034813 | |
| InParanoid | P0AF28 | |
| KO | K07684 | |
| OMA | NTSRPAY | |
| OrthoDB | EOG69GZGV | |
| PhylomeDB | P0AF28 | |
| BioCyc | EcoCyc:NARL-MONOMER ECOL316407:JW1212-MONOMER | |
| EvolutionaryTrace | P0AF28 | |
| PRO | PR:P0AF28 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P0AF28 | |
| GO | GO:0005524 GO:0003677 GO:0003700 GO:0042128 GO:0000160 GO:0010468 GO:0090352 GO:0006355 GO:0006351 | |
| Gene3D | 1.10.10.10 | |
| InterPro | IPR011006 IPR016032 IPR001789 IPR000792 IPR011991 | |
| Pfam | PF00196 PF00072 | |
| PRINTS | PR00038 | |
| SMART | SM00421 SM00448 | |
| SUPFAM | SSF46894 SSF52172 | |
| PROSITE | PS00622 PS50043 PS50110 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0006355 |
regulation of transcription, DNA-dependent |
ECO:0000315 |
P |
Table 4: shows the regulation ability of NarL mutants in activating sigma factor transcription |
complete | |||||
|
part_of |
GO:0032993 |
protein-DNA complex |
ECO:0005631 |
DNAse footprinting evidence used in manual assertion |
RefSeq:NC_000913.2 |
C |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0032993 |
protein-DNA complex |
ECO:0001807 |
electrophoretic mobility shift assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0001217 |
DNA-binding transcription repressor activity |
ECO:0005631 |
DNAse footprinting evidence used in manual assertion |
RefSeq:NC_000913.2 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0001217 |
DNA-binding transcription repressor activity |
ECO:0001807 |
electrophoretic mobility shift assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0000976 |
transcription regulatory region sequence-specific DNA binding |
ECO:0005631 |
DNAse footprinting evidence used in manual assertion |
RefSeq:NC_000913.2 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0000976 |
transcription regulatory region sequence-specific DNA binding |
ECO:0001807 |
electrophoretic mobility shift assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0090352 |
regulation of nitrate assimilation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0010468 |
regulation of gene expression |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005829 |
cytosol |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0045892 |
negative regulation of transcription, DNA-templated |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0001217 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0045892 |
negative regulation of transcription, DNA-templated |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0001217 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0000160 |
phosphorelay signal transduction system |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0000160 |
phosphorelay signal transduction system |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0005524 |
ATP binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0000166 |
nucleotide binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0042128 |
nitrate assimilation |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Lin, AV & Stewart, V (2010) Functional roles for the GerE-family carboxyl-terminal domains of nitrate response regulators NarL and NarP of Escherichia coli K-12. Microbiology (Reading, Engl.) 156 2933-43 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 Xu, M et al. (2009) Activation and repression at the Escherichia coli ynfEFGHI operon promoter. J. Bacteriol. 191 3172-6 PubMed GONUTS page
- ↑ Egan, SM & Stewart, V (1991) Mutational analysis of nitrate regulatory gene narL in Escherichia coli K-12. J. Bacteriol. 173 4424-32 PubMed GONUTS page
- ↑ Stewart, V & Bledsoe, PJ (2005) Fnr-, NarP- and NarL-dependent regulation of transcription initiation from the Haemophilus influenzae Rd napF (periplasmic nitrate reductase) promoter in Escherichia coli K-12. J. Bacteriol. 187 6928-35 PubMed GONUTS page
- ↑ 5.0 5.1 Tyson, KL et al. (1994) Nitrite and nitrate regulation at the promoters of two Escherichia coli operons encoding nitrite reductase: identification of common target heptamers for both NarP- and NarL-dependent regulation. Mol. Microbiol. 13 1045-55 PubMed GONUTS page
- ↑ Ishihama, Y et al. (2008) Protein abundance profiling of the Escherichia coli cytosol. BMC Genomics 9 102 PubMed GONUTS page
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