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ECOLI:MIAA
Contents
| Species (Taxon ID) | Escherichia coli (strain K12). (83333) | |
| Gene Name(s) | miaA (synonyms: trpX) | |
| Protein Name(s) | tRNA dimethylallyltransferase
Dimethylallyl diphosphate:tRNA dimethylallyltransferase DMAPP:tRNA dimethylallyltransferase DMATase Isopentenyl-diphosphate:tRNA isopentenyltransferase IPP transferase IPPT IPTase | |
| External Links | ||
| UniProt | P16384 | |
| EMBL | M63655 U14003 U00096 AP009048 D00743 U00005 Z11831 | |
| PIR | B37318 | |
| RefSeq | NP_418592.1 YP_492313.1 | |
| PDB | 2ZM5 2ZXU 3FOZ | |
| PDBsum | 2ZM5 2ZXU 3FOZ | |
| ProteinModelPortal | P16384 | |
| SMR | P16384 | |
| IntAct | P16384 | |
| STRING | 511145.b4171 | |
| PaxDb | P16384 | |
| PRIDE | P16384 | |
| EnsemblBacteria | AAC77128 BAE78172 | |
| GeneID | 12934008 948690 | |
| KEGG | ecj:Y75_p4057 eco:b4171 | |
| PATRIC | 32123915 | |
| EchoBASE | EB0590 | |
| EcoGene | EG10595 | |
| eggNOG | COG0324 | |
| HOGENOM | HOG000039996 | |
| InParanoid | P16384 | |
| KO | K00791 | |
| OMA | PELNWLE | |
| OrthoDB | EOG661HB3 | |
| PhylomeDB | P16384 | |
| BioCyc | EcoCyc:EG10595-MONOMER ECOL316407:JW4129-MONOMER MetaCyc:EG10595-MONOMER | |
| EvolutionaryTrace | P16384 | |
| PRO | PR:P16384 | |
| Proteomes | UP000000318 UP000000625 | |
| Genevestigator | P16384 | |
| GO | GO:0005524 GO:0052381 GO:0034605 GO:0006400 | |
| Gene3D | 3.40.50.300 | |
| HAMAP | MF_00185 | |
| InterPro | IPR002627 IPR027417 IPR018022 | |
| PANTHER | PTHR11088 | |
| Pfam | PF01715 | |
| SUPFAM | SSF52540 | |
| TIGRFAMs | TIGR00174 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
incorrect (CACAO) |
GO:0044207 |
translation initiation ternary complex |
ECO:0000314 |
C |
table 2 and 3: Thus, it is concluded that the joining of the 50S particle to the initiation complex does not involve dissociation of the bound F-met-tRNA. |
complete | ||||
|
enables |
GO:0052381 |
tRNA dimethylallyltransferase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10595 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006400 |
tRNA modification |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10595 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:1990497 |
regulation of cytoplasmic translation in response to stress |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0052381 |
tRNA dimethylallyltransferase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0034605 |
cellular response to heat |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0034605 |
cellular response to heat |
ECO:0000270 |
expression pattern evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006400 |
tRNA modification |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006400 |
tRNA modification |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0008033 |
tRNA processing |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0052381 |
tRNA dimethylallyltransferase activity |
ECO:0000501 |
evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0005524 |
ATP binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000079220 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0008033 |
tRNA processing |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000079220 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0052381 |
tRNA dimethylallyltransferase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000079220 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0008033 |
tRNA processing |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0005524 |
ATP binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0000166 |
nucleotide binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016740 |
transferase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Nomura, M et al. (1967) The initiation of protein synthesis: joining of the 50S ribosomal subunit to the initiation complex. Proc. Natl. Acad. Sci. U.S.A. 58 1487-93 PubMed GONUTS page
- ↑ 2.0 2.1 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Thompson, KM & Gottesman, S (2014) The MiaA tRNA modification enzyme is necessary for robust RpoS expression in Escherichia coli. J. Bacteriol. 196 754-61 PubMed GONUTS page
- ↑ Rosenbaum, N & Gefter, ML (1972) Delta 2 -isopentenylpyrophosphate: transfer ribonucleic acid 2 -isopentenyltransferase from Escherichia coli. Purification and properties of the enzyme. J. Biol. Chem. 247 5675-80 PubMed GONUTS page
- ↑ 5.0 5.1 Tsui, HC et al. (1996) Transcription of the mutL repair, miaA tRNA modification, hfq pleiotropic regulator, and hflA region protease genes of Escherichia coli K-12 from clustered Esigma32-specific promoters during heat shock. J. Bacteriol. 178 5719-31 PubMed GONUTS page
- ↑ Eisenberg, SP et al. (1979) The effect of an Escherichia coli regulatory mutation on transfer RNA structure. J. Mol. Biol. 135 111-26 PubMed GONUTS page
- ↑ Vold, BS et al. (1979) Characterization of a deficiency of N6-(delta 2-isopentenyl)-2-methylthioadenosine in the Escherichia coli mutant trpX by use of antibodies to N6-(delta 2-isopentenyl)adenosine. J. Biol. Chem. 254 7362-7 PubMed GONUTS page
b
